miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 13173 0.66 0.675335
Target:  5'- cGCGCaGACAgcgggagcggucgaGCAGGCcgCCGGcCGACg -3'
miRNA:   3'- cUGCGgCUGU--------------UGUCCGaaGGUC-GUUG- -5'
28056 5' -54.3 NC_005887.1 + 13256 0.66 0.667372
Target:  5'- cGCGaCCGACGgucacaagGCGGGCguuUUCCGGUAuGCg -3'
miRNA:   3'- cUGC-GGCUGU--------UGUCCG---AAGGUCGU-UG- -5'
28056 5' -54.3 NC_005887.1 + 13292 0.7 0.415218
Target:  5'- aGGCGCUGAaccagauCGGcCAGGCgUUCGGCAACg -3'
miRNA:   3'- -CUGCGGCU-------GUU-GUCCGaAGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 13680 0.7 0.403608
Target:  5'- cGGCGCgacgggugggaucuCGACcACGGGCggCCAGCAGa -3'
miRNA:   3'- -CUGCG--------------GCUGuUGUCCGaaGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 13745 0.66 0.667372
Target:  5'- cGAUGCCGuACGGCuGGCgcgaggacgauUUCCAG-AGCg -3'
miRNA:   3'- -CUGCGGC-UGUUGuCCG-----------AAGGUCgUUG- -5'
28056 5' -54.3 NC_005887.1 + 13780 0.68 0.554677
Target:  5'- cGCGuCCGcGCAGCGGGCggcgacgccuacaaaUUCAGCAGCc -3'
miRNA:   3'- cUGC-GGC-UGUUGUCCGa--------------AGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14029 1.1 0.000592
Target:  5'- aGACGCCGACAACAGGCUUCCAGCAACa -3'
miRNA:   3'- -CUGCGGCUGUUGUCCGAAGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14323 0.76 0.19075
Target:  5'- cGACGCCGACaAGCAGGUgaaCgCGGCGAUc -3'
miRNA:   3'- -CUGCGGCUG-UUGUCCGaa-G-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14360 0.7 0.416195
Target:  5'- --gGCCGACGACGcgauucGGCccgagCCGGCGGCg -3'
miRNA:   3'- cugCGGCUGUUGU------CCGaa---GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14620 0.67 0.564789
Target:  5'- cGGCGCCGuCGA-GGGCgcgcUCaCGGCAGCc -3'
miRNA:   3'- -CUGCGGCuGUUgUCCGa---AG-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14829 0.7 0.423071
Target:  5'- cGACGCUGAUGGCGGGCacgUUCGcgggcgugcacaccGCAGCa -3'
miRNA:   3'- -CUGCGGCUGUUGUCCGa--AGGU--------------CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 15426 0.66 0.678742
Target:  5'- aGugGuUCGuCGAC-GGCggCCAGCGACu -3'
miRNA:   3'- -CugC-GGCuGUUGuCCGaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 15498 0.68 0.520295
Target:  5'- uGC-CCGGCGGCAacGGCUaCCGGCAGa -3'
miRNA:   3'- cUGcGGCUGUUGU--CCGAaGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 15615 0.7 0.43602
Target:  5'- gGGCGUCGcGCAGCAGGCggCCGGg--- -3'
miRNA:   3'- -CUGCGGC-UGUUGUCCGaaGGUCguug -5'
28056 5' -54.3 NC_005887.1 + 15772 0.67 0.610217
Target:  5'- cGGCGCCGucuacaAGCAGGaggacgaCGGCAGCg -3'
miRNA:   3'- -CUGCGGCug----UUGUCCgaag---GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 15862 0.78 0.127959
Target:  5'- aACGCCcgcgcGCAGCAGGCgcaCCAGCAGCu -3'
miRNA:   3'- cUGCGGc----UGUUGUCCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 16474 0.67 0.620506
Target:  5'- cGAcCGCgCGGCAggauccgGCGGGCUggUCGGCGAUg -3'
miRNA:   3'- -CU-GCG-GCUGU-------UGUCCGAa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 16535 0.69 0.45638
Target:  5'- cGGCGCCGAg--UGGGCgcgUCAGCAACu -3'
miRNA:   3'- -CUGCGGCUguuGUCCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 17429 0.66 0.633093
Target:  5'- cGCGaUCGACAACGGuGCcgaUCCGGCuGCu -3'
miRNA:   3'- cUGC-GGCUGUUGUC-CGa--AGGUCGuUG- -5'
28056 5' -54.3 NC_005887.1 + 18171 0.67 0.576081
Target:  5'- cGACGCUGugGGCggcuaucgaucGGGCgUUCCuGCGAg -3'
miRNA:   3'- -CUGCGGCugUUG-----------UCCG-AAGGuCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.