miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 271 0.67 0.62165
Target:  5'- cGCGCCccacGCGACAGcGCUcgucgaUCCAGuCGGCg -3'
miRNA:   3'- cUGCGGc---UGUUGUC-CGA------AGGUC-GUUG- -5'
28056 5' -54.3 NC_005887.1 + 1478 0.73 0.271771
Target:  5'- cGACGCCGACGGCGugcGGCgcUCGcGCGGCg -3'
miRNA:   3'- -CUGCGGCUGUUGU---CCGaaGGU-CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 1896 0.66 0.633093
Target:  5'- cGACGCCGGCAuuCGGGaucaugUCgAGCGc- -3'
miRNA:   3'- -CUGCGGCUGUu-GUCCga----AGgUCGUug -5'
28056 5' -54.3 NC_005887.1 + 2184 0.71 0.387516
Target:  5'- uGACGCCGGCcGC-GGUgaUCgGGCAGCg -3'
miRNA:   3'- -CUGCGGCUGuUGuCCGa-AGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 2328 0.67 0.60679
Target:  5'- -uCGCUGGCAucuauggcgauccgGCGGGCgaCCAGCGcucGCa -3'
miRNA:   3'- cuGCGGCUGU--------------UGUCCGaaGGUCGU---UG- -5'
28056 5' -54.3 NC_005887.1 + 3297 0.71 0.386582
Target:  5'- cACGCCGGCGACGcagcucuggcaucGGCUgaagaCgGGCAACg -3'
miRNA:   3'- cUGCGGCUGUUGU-------------CCGAa----GgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 3501 0.68 0.553556
Target:  5'- cGACGUCGGCAA-GGGCaucgUCUAccGCAACg -3'
miRNA:   3'- -CUGCGGCUGUUgUCCGa---AGGU--CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 4407 0.69 0.466749
Target:  5'- cGCGCCGGCGA-AGGCgcggcgaUCCuGCAAUg -3'
miRNA:   3'- cUGCGGCUGUUgUCCGa------AGGuCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 6609 0.66 0.633093
Target:  5'- cGACGCUGGCGGCAccGGa-UCCGaCAACg -3'
miRNA:   3'- -CUGCGGCUGUUGU--CCgaAGGUcGUUG- -5'
28056 5' -54.3 NC_005887.1 + 7326 0.66 0.678742
Target:  5'- -cCGCCGACAACAcGa--CUGGCGACg -3'
miRNA:   3'- cuGCGGCUGUUGUcCgaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 8211 0.68 0.553556
Target:  5'- cGCGCacCGACAcgcGCGGGCUgUUCAGCAu- -3'
miRNA:   3'- cUGCG--GCUGU---UGUCCGA-AGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 8950 0.69 0.45638
Target:  5'- aGCGCCGACAcgauguACcuGUUUCaCGGCGGCa -3'
miRNA:   3'- cUGCGGCUGU------UGucCGAAG-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 9686 0.69 0.45638
Target:  5'- gGACGCCGAcCAGCAGaccgaugacucaGCgaucgUgCAGCAGCu -3'
miRNA:   3'- -CUGCGGCU-GUUGUC------------CGa----AgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 10034 0.69 0.443087
Target:  5'- cGCGCUGGCAcgaacaGCGGcaucaugucgcucuGCUUCCAGCAGg -3'
miRNA:   3'- cUGCGGCUGU------UGUC--------------CGAAGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 11896 0.69 0.446135
Target:  5'- aGCGCCGGCAACuucacggcgGGGCUcacgUCUGGCGu- -3'
miRNA:   3'- cUGCGGCUGUUG---------UCCGA----AGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 12058 0.66 0.633093
Target:  5'- aGGCGCCGcgcuGCAGCAGGU---CGGCAc- -3'
miRNA:   3'- -CUGCGGC----UGUUGUCCGaagGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 12162 0.68 0.508292
Target:  5'- --gGCCGGCGagaaguggaagcuGCAGGCgUUCC-GCGACu -3'
miRNA:   3'- cugCGGCUGU-------------UGUCCG-AAGGuCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 12360 0.66 0.644536
Target:  5'- aGGCGgUGACGugGCAGGC--CgAGCAGCa -3'
miRNA:   3'- -CUGCgGCUGU--UGUCCGaaGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 12535 0.71 0.369133
Target:  5'- uGGCGCCGcGCAcacccGCAGaCUUCCAGCuACu -3'
miRNA:   3'- -CUGCGGC-UGU-----UGUCcGAAGGUCGuUG- -5'
28056 5' -54.3 NC_005887.1 + 12646 0.72 0.325848
Target:  5'- cGACGCgaCGGCGAguGGCUgcgCguGCAGCu -3'
miRNA:   3'- -CUGCG--GCUGUUguCCGAa--GguCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.