miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 30032 0.7 0.43602
Target:  5'- cGCGCCGACGccacccucAUAGGCgagcgCCAGCu-- -3'
miRNA:   3'- cUGCGGCUGU--------UGUCCGaa---GGUCGuug -5'
28056 5' -54.3 NC_005887.1 + 3297 0.71 0.386582
Target:  5'- cACGCCGGCGACGcagcucuggcaucGGCUgaagaCgGGCAACg -3'
miRNA:   3'- cUGCGGCUGUUGU-------------CCGAa----GgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 2184 0.71 0.387516
Target:  5'- uGACGCCGGCcGC-GGUgaUCgGGCAGCg -3'
miRNA:   3'- -CUGCGGCUGuUGuCCGa-AGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 13680 0.7 0.403608
Target:  5'- cGGCGCgacgggugggaucuCGACcACGGGCggCCAGCAGa -3'
miRNA:   3'- -CUGCG--------------GCUGuUGUCCGaaGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 41410 0.7 0.405528
Target:  5'- cGAUGCCGA--GCAGGUcgaauucUUCCAGCGc- -3'
miRNA:   3'- -CUGCGGCUguUGUCCG-------AAGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 21650 0.7 0.406491
Target:  5'- cGACGCCGACcaaucuGACGGGCgugUCgCugacgucgggGGCAGCu -3'
miRNA:   3'- -CUGCGGCUG------UUGUCCGa--AG-G----------UCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 13292 0.7 0.415218
Target:  5'- aGGCGCUGAaccagauCGGcCAGGCgUUCGGCAACg -3'
miRNA:   3'- -CUGCGGCU-------GUU-GUCCGaAGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14829 0.7 0.423071
Target:  5'- cGACGCUGAUGGCGGGCacgUUCGcgggcgugcacaccGCAGCa -3'
miRNA:   3'- -CUGCGGCUGUUGUCCGa--AGGU--------------CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 15615 0.7 0.43602
Target:  5'- gGGCGUCGcGCAGCAGGCggCCGGg--- -3'
miRNA:   3'- -CUGCGGC-UGUUGUCCGaaGGUCguug -5'
28056 5' -54.3 NC_005887.1 + 35362 0.72 0.317657
Target:  5'- cACGcCCGGCAccacGCGGGCcUgCAGCAGCu -3'
miRNA:   3'- cUGC-GGCUGU----UGUCCGaAgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 32420 0.72 0.301741
Target:  5'- cGugGCCGGCGGCGauGUggCCGGCGGCg -3'
miRNA:   3'- -CugCGGCUGUUGUc-CGaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 23519 0.72 0.301741
Target:  5'- cGCGCUGACGaacgcGCGGGUgagCUGGCAGCg -3'
miRNA:   3'- cUGCGGCUGU-----UGUCCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 14323 0.76 0.19075
Target:  5'- cGACGCCGACaAGCAGGUgaaCgCGGCGAUc -3'
miRNA:   3'- -CUGCGGCUG-UUGUCCGaa-G-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 25016 0.75 0.213131
Target:  5'- cGCGCCGGCGGCcgccGGCcagCCGGUAGCg -3'
miRNA:   3'- cUGCGGCUGUUGu---CCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 19554 0.74 0.23773
Target:  5'- cGGCGUCGAUuacguuGCAGGCacgUCgAGCAGCg -3'
miRNA:   3'- -CUGCGGCUGu-----UGUCCGa--AGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 21858 0.74 0.257706
Target:  5'- cACGuuGACGACuGGCgcaCAGCAGCu -3'
miRNA:   3'- cUGCggCUGUUGuCCGaagGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 28345 0.73 0.264663
Target:  5'- uGCGCCGGCGcgGCAuuGGCUUCgAGCAcgaACg -3'
miRNA:   3'- cUGCGGCUGU--UGU--CCGAAGgUCGU---UG- -5'
28056 5' -54.3 NC_005887.1 + 1478 0.73 0.271771
Target:  5'- cGACGCCGACGGCGugcGGCgcUCGcGCGGCg -3'
miRNA:   3'- -CUGCGGCUGUUGU---CCGaaGGU-CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 27799 0.73 0.290971
Target:  5'- cGGCGCCGAC-GCAGGCgagggaauagaUAGCGGCu -3'
miRNA:   3'- -CUGCGGCUGuUGUCCGaag--------GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 23228 0.72 0.301741
Target:  5'- cACGCCGACGGCAcGCgagCGGCGGCg -3'
miRNA:   3'- cUGCGGCUGUUGUcCGaagGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.