miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 14029 1.1 0.000592
Target:  5'- aGACGCCGACAACAGGCUUCCAGCAACa -3'
miRNA:   3'- -CUGCGGCUGUUGUCCGAAGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 15862 0.78 0.127959
Target:  5'- aACGCCcgcgcGCAGCAGGCgcaCCAGCAGCu -3'
miRNA:   3'- cUGCGGc----UGUUGUCCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 18888 0.76 0.19075
Target:  5'- -uCGCCGGCugcCGGGCUUCCGGUggaAGCg -3'
miRNA:   3'- cuGCGGCUGuu-GUCCGAAGGUCG---UUG- -5'
28056 5' -54.3 NC_005887.1 + 14323 0.76 0.19075
Target:  5'- cGACGCCGACaAGCAGGUgaaCgCGGCGAUc -3'
miRNA:   3'- -CUGCGGCUG-UUGUCCGaa-G-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 25016 0.75 0.213131
Target:  5'- cGCGCCGGCGGCcgccGGCcagCCGGUAGCg -3'
miRNA:   3'- cUGCGGCUGUUGu---CCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 19554 0.74 0.23773
Target:  5'- cGGCGUCGAUuacguuGCAGGCacgUCgAGCAGCg -3'
miRNA:   3'- -CUGCGGCUGu-----UGUCCGa--AGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 21858 0.74 0.257706
Target:  5'- cACGuuGACGACuGGCgcaCAGCAGCu -3'
miRNA:   3'- cUGCggCUGUUGuCCGaagGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 28345 0.73 0.264663
Target:  5'- uGCGCCGGCGcgGCAuuGGCUUCgAGCAcgaACg -3'
miRNA:   3'- cUGCGGCUGU--UGU--CCGAAGgUCGU---UG- -5'
28056 5' -54.3 NC_005887.1 + 1478 0.73 0.271771
Target:  5'- cGACGCCGACGGCGugcGGCgcUCGcGCGGCg -3'
miRNA:   3'- -CUGCGGCUGUUGU---CCGaaGGU-CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 27799 0.73 0.290971
Target:  5'- cGGCGCCGAC-GCAGGCgagggaauagaUAGCGGCu -3'
miRNA:   3'- -CUGCGGCUGuUGUCCGaag--------GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 32420 0.72 0.301741
Target:  5'- cGugGCCGGCGGCGauGUggCCGGCGGCg -3'
miRNA:   3'- -CugCGGCUGUUGUc-CGaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 23519 0.72 0.301741
Target:  5'- cGCGCUGACGaacgcGCGGGUgagCUGGCAGCg -3'
miRNA:   3'- cUGCGGCUGU-----UGUCCGaa-GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 23228 0.72 0.301741
Target:  5'- cACGCCGACGGCAcGCgagCGGCGGCg -3'
miRNA:   3'- cUGCGGCUGUUGUcCGaagGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 32581 0.72 0.307241
Target:  5'- cAUGCCGAuCAGCAGGCUgucggacuccaccaUCCAcGCAAg -3'
miRNA:   3'- cUGCGGCU-GUUGUCCGA--------------AGGU-CGUUg -5'
28056 5' -54.3 NC_005887.1 + 38010 0.72 0.308826
Target:  5'- cGCGCCGGCGucgaucaguuccuGC-GGCaugUCCGGCAGCu -3'
miRNA:   3'- cUGCGGCUGU-------------UGuCCGa--AGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 35362 0.72 0.317657
Target:  5'- cACGcCCGGCAccacGCGGGCcUgCAGCAGCu -3'
miRNA:   3'- cUGC-GGCUGU----UGUCCGaAgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 40827 0.72 0.325848
Target:  5'- -uCGUCGACAGCAGGU--CCGGguACg -3'
miRNA:   3'- cuGCGGCUGUUGUCCGaaGGUCguUG- -5'
28056 5' -54.3 NC_005887.1 + 12646 0.72 0.325848
Target:  5'- cGACGCgaCGGCGAguGGCUgcgCguGCAGCu -3'
miRNA:   3'- -CUGCG--GCUGUUguCCGAa--GguCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 21041 0.72 0.331675
Target:  5'- cGGCGCgGugGGCgugcccgugaauguGGGCgacgCCAGCAGCg -3'
miRNA:   3'- -CUGCGgCugUUG--------------UCCGaa--GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 39933 0.71 0.360168
Target:  5'- -uCGUCGGC-GCGGGCUUcgccucgaagCCAGCGGCa -3'
miRNA:   3'- cuGCGGCUGuUGUCCGAA----------GGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.