Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28058 | 3' | -57.7 | NC_005887.1 | + | 17681 | 0.68 | 0.371489 |
Target: 5'- uGCCGGCCGcggcuggacAAUGUCgaaGCGgauUCUCACCa -3' miRNA: 3'- -CGGCCGGCa--------UUACGG---CGC---AGAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41696 | 0.7 | 0.298631 |
Target: 5'- gGUCGGCgGUcAUGCgCGUGcgCUCGCCg -3' miRNA: 3'- -CGGCCGgCAuUACG-GCGCa-GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 36475 | 0.7 | 0.291255 |
Target: 5'- uCCGGUCGUAGcUGUCGCcccaCUCGCCUu -3' miRNA: 3'- cGGCCGGCAUU-ACGGCGca--GAGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 17812 | 0.71 | 0.263178 |
Target: 5'- cCCGGCCGaaggUGcgGCCGCGcgugaugCUUACCg -3' miRNA: 3'- cGGCCGGC----AUuaCGGCGCa------GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 24658 | 0.71 | 0.256512 |
Target: 5'- aGCCGGCCGUcacgaacaucGUGCCGaCGUC--GCCa -3' miRNA: 3'- -CGGCCGGCAu---------UACGGC-GCAGagUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 31025 | 0.71 | 0.249984 |
Target: 5'- aCCGGCCGUcGcgGuuGCGgcgCUCGCUg -3' miRNA: 3'- cGGCCGGCA-UuaCggCGCa--GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 29357 | 0.72 | 0.23734 |
Target: 5'- cGCCuGGuCCGggucGGUGCCGCGggUCGCCg -3' miRNA: 3'- -CGG-CC-GGCa---UUACGGCGCagAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 37920 | 0.68 | 0.399241 |
Target: 5'- uGCCGGCUGcugcaaccauugcagGAUcGCCGCGcCuUCGCCg -3' miRNA: 3'- -CGGCCGGCa--------------UUA-CGGCGCaG-AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 17902 | 0.67 | 0.426373 |
Target: 5'- -aCGGCC-UGAUGCUGCGUgUCcugcucgcgACCUg -3' miRNA: 3'- cgGCCGGcAUUACGGCGCAgAG---------UGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 751 | 0.67 | 0.432122 |
Target: 5'- cGCCGGCCGccgcaccuggGCCGCcG-CUgGCCg -3' miRNA: 3'- -CGGCCGGCauua------CGGCG-CaGAgUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 5236 | 0.66 | 0.527508 |
Target: 5'- uCCGGgCG-AcgGCCGCGcgaUCGCCg -3' miRNA: 3'- cGGCCgGCaUuaCGGCGCag-AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 35078 | 0.66 | 0.527508 |
Target: 5'- gGgCGGCCGgggccGAUGUCGCGg-UCGCUg -3' miRNA: 3'- -CgGCCGGCa----UUACGGCGCagAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 24615 | 0.66 | 0.516945 |
Target: 5'- cGCgCGGCCGU---GCCgaGCGUCUugaagaacggCACCUu -3' miRNA: 3'- -CG-GCCGGCAuuaCGG--CGCAGA----------GUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 18792 | 0.66 | 0.485792 |
Target: 5'- uGCCGGCCGgcGAUGCgggcggcgucaGCGUacgcugccagCUCACCc -3' miRNA: 3'- -CGGCCGGCa-UUACGg----------CGCA----------GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41363 | 0.67 | 0.475606 |
Target: 5'- cGgCGGCCGgcaauuUGCgCGUGUCggcgaUCACCUc -3' miRNA: 3'- -CgGCCGGCauu---ACG-GCGCAG-----AGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 40368 | 0.67 | 0.475606 |
Target: 5'- aGCCGGCCGgcagguUGUCGaUGuUCUCgGCCg -3' miRNA: 3'- -CGGCCGGCauu---ACGGC-GC-AGAG-UGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 40856 | 0.67 | 0.465527 |
Target: 5'- cGCaCGGCCGc---GCCGCG-CgagCGCCg -3' miRNA: 3'- -CG-GCCGGCauuaCGGCGCaGa--GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 35900 | 0.67 | 0.465527 |
Target: 5'- cCCGGUcuucggacagaCGgAAUGCCGCGUgUUGCCg -3' miRNA: 3'- cGGCCG-----------GCaUUACGGCGCAgAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 11542 | 0.67 | 0.465527 |
Target: 5'- aCUGGCCGag--GCCGCGgugCgCGCCa -3' miRNA: 3'- cGGCCGGCauuaCGGCGCa--GaGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 39269 | 0.67 | 0.43598 |
Target: 5'- -gCGGCCGUGGU-CgGCGUUcagCGCCUg -3' miRNA: 3'- cgGCCGGCAUUAcGgCGCAGa--GUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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