Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28058 | 3' | -57.7 | NC_005887.1 | + | 5755 | 0.68 | 0.389243 |
Target: 5'- uCCGGCCGag--GCCGCGaaggcgCUgGCCg -3' miRNA: 3'- cGGCCGGCauuaCGGCGCa-----GAgUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 15872 | 0.68 | 0.389243 |
Target: 5'- -gCGGCCGgcAUGCC-CGUgCUCgugGCCUa -3' miRNA: 3'- cgGCCGGCauUACGGcGCA-GAG---UGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 39459 | 0.68 | 0.398326 |
Target: 5'- cGgCGGCCGacGUGUC-CGUCgUCGCCUg -3' miRNA: 3'- -CgGCCGGCauUACGGcGCAG-AGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 37920 | 0.68 | 0.399241 |
Target: 5'- uGCCGGCUGcugcaaccauugcagGAUcGCCGCGcCuUCGCCg -3' miRNA: 3'- -CGGCCGGCa--------------UUA-CGGCGCaG-AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 23572 | 0.68 | 0.404764 |
Target: 5'- cGCCGGCCGgcaGUGCgaacgcgacuacgaCGCG-CUgACCg -3' miRNA: 3'- -CGGCCGGCau-UACG--------------GCGCaGAgUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 17902 | 0.67 | 0.426373 |
Target: 5'- -aCGGCC-UGAUGCUGCGUgUCcugcucgcgACCUg -3' miRNA: 3'- cgGCCGGcAUUACGGCGCAgAG---------UGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 751 | 0.67 | 0.432122 |
Target: 5'- cGCCGGCCGccgcaccuggGCCGCcG-CUgGCCg -3' miRNA: 3'- -CGGCCGGCauua------CGGCG-CaGAgUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 39269 | 0.67 | 0.43598 |
Target: 5'- -gCGGCCGUGGU-CgGCGUUcagCGCCUg -3' miRNA: 3'- cgGCCGGCAUUAcGgCGCAGa--GUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 13203 | 0.67 | 0.43598 |
Target: 5'- cGCCGGCCGacguGUGUCGCuG-CUgaCGCCa -3' miRNA: 3'- -CGGCCGGCau--UACGGCG-CaGA--GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 308 | 0.67 | 0.43598 |
Target: 5'- aGCgaGGCCGcGGUGCgCGCGUa-CACCg -3' miRNA: 3'- -CGg-CCGGCaUUACG-GCGCAgaGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 7299 | 0.67 | 0.45556 |
Target: 5'- uGUgGGUCGUcGUGUCGCcGUCcgUCGCCg -3' miRNA: 3'- -CGgCCGGCAuUACGGCG-CAG--AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 40856 | 0.67 | 0.465527 |
Target: 5'- cGCaCGGCCGc---GCCGCG-CgagCGCCg -3' miRNA: 3'- -CG-GCCGGCauuaCGGCGCaGa--GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 11542 | 0.67 | 0.465527 |
Target: 5'- aCUGGCCGag--GCCGCGgugCgCGCCa -3' miRNA: 3'- cGGCCGGCauuaCGGCGCa--GaGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 35900 | 0.67 | 0.465527 |
Target: 5'- cCCGGUcuucggacagaCGgAAUGCCGCGUgUUGCCg -3' miRNA: 3'- cGGCCG-----------GCaUUACGGCGCAgAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 26344 | 0.67 | 0.465527 |
Target: 5'- cGCUGGCCG-GGUG-CGCGaacaUCACCg -3' miRNA: 3'- -CGGCCGGCaUUACgGCGCag--AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 24108 | 0.67 | 0.471561 |
Target: 5'- gGCCcuuGGCCGUGcUGCgCGUGUCgugcggugugaagCGCCg -3' miRNA: 3'- -CGG---CCGGCAUuACG-GCGCAGa------------GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 4788 | 0.67 | 0.475606 |
Target: 5'- cGCCaGCCGgcgagGCCGUG-CUCGCg- -3' miRNA: 3'- -CGGcCGGCauua-CGGCGCaGAGUGga -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41363 | 0.67 | 0.475606 |
Target: 5'- cGgCGGCCGgcaauuUGCgCGUGUCggcgaUCACCUc -3' miRNA: 3'- -CgGCCGGCauu---ACG-GCGCAG-----AGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 40368 | 0.67 | 0.475606 |
Target: 5'- aGCCGGCCGgcagguUGUCGaUGuUCUCgGCCg -3' miRNA: 3'- -CGGCCGGCauu---ACGGC-GC-AGAG-UGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 18792 | 0.66 | 0.485792 |
Target: 5'- uGCCGGCCGgcGAUGCgggcggcgucaGCGUacgcugccagCUCACCc -3' miRNA: 3'- -CGGCCGGCa-UUACGg----------CGCA----------GAGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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