Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28058 | 3' | -57.7 | NC_005887.1 | + | 13594 | 1.1 | 0.000352 |
Target: 5'- cGCCGGCCGUAAUGCCGCGUCUCACCUa -3' miRNA: 3'- -CGGCCGGCAUUACGGCGCAGAGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 15203 | 0.75 | 0.130847 |
Target: 5'- cGCCcguGGCCGUucgGCCGCGUgaUCGCCg -3' miRNA: 3'- -CGG---CCGGCAuuaCGGCGCAg-AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 1000 | 0.73 | 0.197258 |
Target: 5'- uGCCGGCCGccGUGCgCGCG-CUguaCACCg -3' miRNA: 3'- -CGGCCGGCauUACG-GCGCaGA---GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 30205 | 0.73 | 0.197258 |
Target: 5'- cGCCGGCCagccacGCCGCGUCgcgGCCUu -3' miRNA: 3'- -CGGCCGGcauua-CGGCGCAGag-UGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 6776 | 0.72 | 0.208067 |
Target: 5'- gGCCaaGGCCGU-GUGCCcgGCG-CUCGCCg -3' miRNA: 3'- -CGG--CCGGCAuUACGG--CGCaGAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 25638 | 0.72 | 0.221709 |
Target: 5'- cGCCGGCCGUcacguacgucuguucGAUGUCGUGUUUgACg- -3' miRNA: 3'- -CGGCCGGCA---------------UUACGGCGCAGAgUGga -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 29357 | 0.72 | 0.23734 |
Target: 5'- cGCCuGGuCCGggucGGUGCCGCGggUCGCCg -3' miRNA: 3'- -CGG-CC-GGCa---UUACGGCGCagAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 31025 | 0.71 | 0.249984 |
Target: 5'- aCCGGCCGUcGcgGuuGCGgcgCUCGCUg -3' miRNA: 3'- cGGCCGGCA-UuaCggCGCa--GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 24658 | 0.71 | 0.256512 |
Target: 5'- aGCCGGCCGUcacgaacaucGUGCCGaCGUC--GCCa -3' miRNA: 3'- -CGGCCGGCAu---------UACGGC-GCAGagUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 17812 | 0.71 | 0.263178 |
Target: 5'- cCCGGCCGaaggUGcgGCCGCGcgugaugCUUACCg -3' miRNA: 3'- cGGCCGGC----AUuaCGGCGCa------GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 13326 | 0.7 | 0.284022 |
Target: 5'- cGCCGGCCGca---UCGCGgaUCUCGCCg -3' miRNA: 3'- -CGGCCGGCauuacGGCGC--AGAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 36475 | 0.7 | 0.291255 |
Target: 5'- uCCGGUCGUAGcUGUCGCcccaCUCGCCUu -3' miRNA: 3'- cGGCCGGCAUU-ACGGCGca--GAGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41696 | 0.7 | 0.298631 |
Target: 5'- gGUCGGCgGUcAUGCgCGUGcgCUCGCCg -3' miRNA: 3'- -CGGCCGgCAuUACG-GCGCa-GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 36259 | 0.69 | 0.345912 |
Target: 5'- uGCgCGGCCGUGccuucGU-CCGCGUaCUCGCUc -3' miRNA: 3'- -CG-GCCGGCAU-----UAcGGCGCA-GAGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 10360 | 0.69 | 0.345912 |
Target: 5'- cGCCGGUaucacguacaaCGgcGUGCCGaCGUCgacuaUCGCCg -3' miRNA: 3'- -CGGCCG-----------GCauUACGGC-GCAG-----AGUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41621 | 0.69 | 0.345912 |
Target: 5'- gGCgCGGcCCGUGAggaucUGCUGCGUCUgCGCg- -3' miRNA: 3'- -CG-GCC-GGCAUU-----ACGGCGCAGA-GUGga -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 41950 | 0.69 | 0.353451 |
Target: 5'- cCCGGCgugcucgCGUGGUGCgugCGCGgcgcgCUCGCCUa -3' miRNA: 3'- cGGCCG-------GCAUUACG---GCGCa----GAGUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 39865 | 0.68 | 0.371489 |
Target: 5'- gGCCGggcucGCCGUcGAUGauCCGCGUCagCGCCUc -3' miRNA: 3'- -CGGC-----CGGCA-UUAC--GGCGCAGa-GUGGA- -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 2321 | 0.68 | 0.371489 |
Target: 5'- gGCCGGCCGccucgaGCCGCGcCaugaugcgCACCg -3' miRNA: 3'- -CGGCCGGCauua--CGGCGCaGa-------GUGGa -5' |
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28058 | 3' | -57.7 | NC_005887.1 | + | 17681 | 0.68 | 0.371489 |
Target: 5'- uGCCGGCCGcggcuggacAAUGUCgaaGCGgauUCUCACCa -3' miRNA: 3'- -CGGCCGGCa--------UUACGG---CGC---AGAGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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