miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 3' -57.7 NC_005887.1 + 308 0.67 0.43598
Target:  5'- aGCgaGGCCGcGGUGCgCGCGUa-CACCg -3'
miRNA:   3'- -CGg-CCGGCaUUACG-GCGCAgaGUGGa -5'
28058 3' -57.7 NC_005887.1 + 751 0.67 0.432122
Target:  5'- cGCCGGCCGccgcaccuggGCCGCcG-CUgGCCg -3'
miRNA:   3'- -CGGCCGGCauua------CGGCG-CaGAgUGGa -5'
28058 3' -57.7 NC_005887.1 + 1000 0.73 0.197258
Target:  5'- uGCCGGCCGccGUGCgCGCG-CUguaCACCg -3'
miRNA:   3'- -CGGCCGGCauUACG-GCGCaGA---GUGGa -5'
28058 3' -57.7 NC_005887.1 + 1582 0.66 0.538152
Target:  5'- cGCCGGCuCGgcg-GCgCGCGgcgCGCCa -3'
miRNA:   3'- -CGGCCG-GCauuaCG-GCGCagaGUGGa -5'
28058 3' -57.7 NC_005887.1 + 2321 0.68 0.371489
Target:  5'- gGCCGGCCGccucgaGCCGCGcCaugaugcgCACCg -3'
miRNA:   3'- -CGGCCGGCauua--CGGCGCaGa-------GUGGa -5'
28058 3' -57.7 NC_005887.1 + 4788 0.67 0.475606
Target:  5'- cGCCaGCCGgcgagGCCGUG-CUCGCg- -3'
miRNA:   3'- -CGGcCGGCauua-CGGCGCaGAGUGga -5'
28058 3' -57.7 NC_005887.1 + 5236 0.66 0.527508
Target:  5'- uCCGGgCG-AcgGCCGCGcgaUCGCCg -3'
miRNA:   3'- cGGCCgGCaUuaCGGCGCag-AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 5755 0.68 0.389243
Target:  5'- uCCGGCCGag--GCCGCGaaggcgCUgGCCg -3'
miRNA:   3'- cGGCCGGCauuaCGGCGCa-----GAgUGGa -5'
28058 3' -57.7 NC_005887.1 + 6776 0.72 0.208067
Target:  5'- gGCCaaGGCCGU-GUGCCcgGCG-CUCGCCg -3'
miRNA:   3'- -CGG--CCGGCAuUACGG--CGCaGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 7299 0.67 0.45556
Target:  5'- uGUgGGUCGUcGUGUCGCcGUCcgUCGCCg -3'
miRNA:   3'- -CGgCCGGCAuUACGGCG-CAG--AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 10360 0.69 0.345912
Target:  5'- cGCCGGUaucacguacaaCGgcGUGCCGaCGUCgacuaUCGCCg -3'
miRNA:   3'- -CGGCCG-----------GCauUACGGC-GCAG-----AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 11542 0.67 0.465527
Target:  5'- aCUGGCCGag--GCCGCGgugCgCGCCa -3'
miRNA:   3'- cGGCCGGCauuaCGGCGCa--GaGUGGa -5'
28058 3' -57.7 NC_005887.1 + 13203 0.67 0.43598
Target:  5'- cGCCGGCCGacguGUGUCGCuG-CUgaCGCCa -3'
miRNA:   3'- -CGGCCGGCau--UACGGCG-CaGA--GUGGa -5'
28058 3' -57.7 NC_005887.1 + 13326 0.7 0.284022
Target:  5'- cGCCGGCCGca---UCGCGgaUCUCGCCg -3'
miRNA:   3'- -CGGCCGGCauuacGGCGC--AGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 13594 1.1 0.000352
Target:  5'- cGCCGGCCGUAAUGCCGCGUCUCACCUa -3'
miRNA:   3'- -CGGCCGGCAUUACGGCGCAGAGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 15203 0.75 0.130847
Target:  5'- cGCCcguGGCCGUucgGCCGCGUgaUCGCCg -3'
miRNA:   3'- -CGG---CCGGCAuuaCGGCGCAg-AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 15872 0.68 0.389243
Target:  5'- -gCGGCCGgcAUGCC-CGUgCUCgugGCCUa -3'
miRNA:   3'- cgGCCGGCauUACGGcGCA-GAG---UGGA- -5'
28058 3' -57.7 NC_005887.1 + 17681 0.68 0.371489
Target:  5'- uGCCGGCCGcggcuggacAAUGUCgaaGCGgauUCUCACCa -3'
miRNA:   3'- -CGGCCGGCa--------UUACGG---CGC---AGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 17812 0.71 0.263178
Target:  5'- cCCGGCCGaaggUGcgGCCGCGcgugaugCUUACCg -3'
miRNA:   3'- cGGCCGGC----AUuaCGGCGCa------GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 17902 0.67 0.426373
Target:  5'- -aCGGCC-UGAUGCUGCGUgUCcugcucgcgACCUg -3'
miRNA:   3'- cgGCCGGcAUUACGGCGCAgAG---------UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.