miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 3' -57.7 NC_005887.1 + 23572 0.68 0.404764
Target:  5'- cGCCGGCCGgcaGUGCgaacgcgacuacgaCGCG-CUgACCg -3'
miRNA:   3'- -CGGCCGGCau-UACG--------------GCGCaGAgUGGa -5'
28058 3' -57.7 NC_005887.1 + 37920 0.68 0.399241
Target:  5'- uGCCGGCUGcugcaaccauugcagGAUcGCCGCGcCuUCGCCg -3'
miRNA:   3'- -CGGCCGGCa--------------UUA-CGGCGCaG-AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 39459 0.68 0.398326
Target:  5'- cGgCGGCCGacGUGUC-CGUCgUCGCCUg -3'
miRNA:   3'- -CgGCCGGCauUACGGcGCAG-AGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 5755 0.68 0.389243
Target:  5'- uCCGGCCGag--GCCGCGaaggcgCUgGCCg -3'
miRNA:   3'- cGGCCGGCauuaCGGCGCa-----GAgUGGa -5'
28058 3' -57.7 NC_005887.1 + 15872 0.68 0.389243
Target:  5'- -gCGGCCGgcAUGCC-CGUgCUCgugGCCUa -3'
miRNA:   3'- cgGCCGGCauUACGGcGCA-GAG---UGGA- -5'
28058 3' -57.7 NC_005887.1 + 2321 0.68 0.371489
Target:  5'- gGCCGGCCGccucgaGCCGCGcCaugaugcgCACCg -3'
miRNA:   3'- -CGGCCGGCauua--CGGCGCaGa-------GUGGa -5'
28058 3' -57.7 NC_005887.1 + 39865 0.68 0.371489
Target:  5'- gGCCGggcucGCCGUcGAUGauCCGCGUCagCGCCUc -3'
miRNA:   3'- -CGGC-----CGGCA-UUAC--GGCGCAGa-GUGGA- -5'
28058 3' -57.7 NC_005887.1 + 17681 0.68 0.371489
Target:  5'- uGCCGGCCGcggcuggacAAUGUCgaaGCGgauUCUCACCa -3'
miRNA:   3'- -CGGCCGGCa--------UUACGG---CGC---AGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 41950 0.69 0.353451
Target:  5'- cCCGGCgugcucgCGUGGUGCgugCGCGgcgcgCUCGCCUa -3'
miRNA:   3'- cGGCCG-------GCAUUACG---GCGCa----GAGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 36259 0.69 0.345912
Target:  5'- uGCgCGGCCGUGccuucGU-CCGCGUaCUCGCUc -3'
miRNA:   3'- -CG-GCCGGCAU-----UAcGGCGCA-GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 10360 0.69 0.345912
Target:  5'- cGCCGGUaucacguacaaCGgcGUGCCGaCGUCgacuaUCGCCg -3'
miRNA:   3'- -CGGCCG-----------GCauUACGGC-GCAG-----AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 41621 0.69 0.345912
Target:  5'- gGCgCGGcCCGUGAggaucUGCUGCGUCUgCGCg- -3'
miRNA:   3'- -CG-GCC-GGCAUU-----ACGGCGCAGA-GUGga -5'
28058 3' -57.7 NC_005887.1 + 41696 0.7 0.298631
Target:  5'- gGUCGGCgGUcAUGCgCGUGcgCUCGCCg -3'
miRNA:   3'- -CGGCCGgCAuUACG-GCGCa-GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 36475 0.7 0.291255
Target:  5'- uCCGGUCGUAGcUGUCGCcccaCUCGCCUu -3'
miRNA:   3'- cGGCCGGCAUU-ACGGCGca--GAGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 13326 0.7 0.284022
Target:  5'- cGCCGGCCGca---UCGCGgaUCUCGCCg -3'
miRNA:   3'- -CGGCCGGCauuacGGCGC--AGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 17812 0.71 0.263178
Target:  5'- cCCGGCCGaaggUGcgGCCGCGcgugaugCUUACCg -3'
miRNA:   3'- cGGCCGGC----AUuaCGGCGCa------GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 24658 0.71 0.256512
Target:  5'- aGCCGGCCGUcacgaacaucGUGCCGaCGUC--GCCa -3'
miRNA:   3'- -CGGCCGGCAu---------UACGGC-GCAGagUGGa -5'
28058 3' -57.7 NC_005887.1 + 31025 0.71 0.249984
Target:  5'- aCCGGCCGUcGcgGuuGCGgcgCUCGCUg -3'
miRNA:   3'- cGGCCGGCA-UuaCggCGCa--GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 29357 0.72 0.23734
Target:  5'- cGCCuGGuCCGggucGGUGCCGCGggUCGCCg -3'
miRNA:   3'- -CGG-CC-GGCa---UUACGGCGCagAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 25638 0.72 0.221709
Target:  5'- cGCCGGCCGUcacguacgucuguucGAUGUCGUGUUUgACg- -3'
miRNA:   3'- -CGGCCGGCA---------------UUACGGCGCAGAgUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.