miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 3' -57.7 NC_005887.1 + 35078 0.66 0.527508
Target:  5'- gGgCGGCCGgggccGAUGUCGCGg-UCGCUg -3'
miRNA:   3'- -CgGCCGGCa----UUACGGCGCagAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 6776 0.72 0.208067
Target:  5'- gGCCaaGGCCGU-GUGCCcgGCG-CUCGCCg -3'
miRNA:   3'- -CGG--CCGGCAuUACGG--CGCaGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 15203 0.75 0.130847
Target:  5'- cGCCcguGGCCGUucgGCCGCGUgaUCGCCg -3'
miRNA:   3'- -CGG---CCGGCAuuaCGGCGCAg-AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 41696 0.7 0.298631
Target:  5'- gGUCGGCgGUcAUGCgCGUGcgCUCGCCg -3'
miRNA:   3'- -CGGCCGgCAuUACG-GCGCa-GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 13594 1.1 0.000352
Target:  5'- cGCCGGCCGUAAUGCCGCGUCUCACCUa -3'
miRNA:   3'- -CGGCCGGCAUUACGGCGCAGAGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 25638 0.72 0.221709
Target:  5'- cGCCGGCCGUcacguacgucuguucGAUGUCGUGUUUgACg- -3'
miRNA:   3'- -CGGCCGGCA---------------UUACGGCGCAGAgUGga -5'
28058 3' -57.7 NC_005887.1 + 5236 0.66 0.527508
Target:  5'- uCCGGgCG-AcgGCCGCGcgaUCGCCg -3'
miRNA:   3'- cGGCCgGCaUuaCGGCGCag-AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 1582 0.66 0.538152
Target:  5'- cGCCGGCuCGgcg-GCgCGCGgcgCGCCa -3'
miRNA:   3'- -CGGCCG-GCauuaCG-GCGCagaGUGGa -5'
28058 3' -57.7 NC_005887.1 + 11542 0.67 0.465527
Target:  5'- aCUGGCCGag--GCCGCGgugCgCGCCa -3'
miRNA:   3'- cGGCCGGCauuaCGGCGCa--GaGUGGa -5'
28058 3' -57.7 NC_005887.1 + 24108 0.67 0.471561
Target:  5'- gGCCcuuGGCCGUGcUGCgCGUGUCgugcggugugaagCGCCg -3'
miRNA:   3'- -CGG---CCGGCAUuACG-GCGCAGa------------GUGGa -5'
28058 3' -57.7 NC_005887.1 + 13326 0.7 0.284022
Target:  5'- cGCCGGCCGca---UCGCGgaUCUCGCCg -3'
miRNA:   3'- -CGGCCGGCauuacGGCGC--AGAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 10360 0.69 0.345912
Target:  5'- cGCCGGUaucacguacaaCGgcGUGCCGaCGUCgacuaUCGCCg -3'
miRNA:   3'- -CGGCCG-----------GCauUACGGC-GCAG-----AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 36259 0.69 0.345912
Target:  5'- uGCgCGGCCGUGccuucGU-CCGCGUaCUCGCUc -3'
miRNA:   3'- -CG-GCCGGCAU-----UAcGGCGCA-GAGUGGa -5'
28058 3' -57.7 NC_005887.1 + 41950 0.69 0.353451
Target:  5'- cCCGGCgugcucgCGUGGUGCgugCGCGgcgcgCUCGCCUa -3'
miRNA:   3'- cGGCCG-------GCAUUACG---GCGCa----GAGUGGA- -5'
28058 3' -57.7 NC_005887.1 + 4788 0.67 0.475606
Target:  5'- cGCCaGCCGgcgagGCCGUG-CUCGCg- -3'
miRNA:   3'- -CGGcCGGCauua-CGGCGCaGAGUGga -5'
28058 3' -57.7 NC_005887.1 + 23572 0.68 0.404764
Target:  5'- cGCCGGCCGgcaGUGCgaacgcgacuacgaCGCG-CUgACCg -3'
miRNA:   3'- -CGGCCGGCau-UACG--------------GCGCaGAgUGGa -5'
28058 3' -57.7 NC_005887.1 + 24882 0.66 0.506467
Target:  5'- cGgCGGCCG--AUGCCGCGcgCUCGg-- -3'
miRNA:   3'- -CgGCCGGCauUACGGCGCa-GAGUgga -5'
28058 3' -57.7 NC_005887.1 + 13203 0.67 0.43598
Target:  5'- cGCCGGCCGacguGUGUCGCuG-CUgaCGCCa -3'
miRNA:   3'- -CGGCCGGCau--UACGGCG-CaGA--GUGGa -5'
28058 3' -57.7 NC_005887.1 + 7299 0.67 0.45556
Target:  5'- uGUgGGUCGUcGUGUCGCcGUCcgUCGCCg -3'
miRNA:   3'- -CGgCCGGCAuUACGGCG-CAG--AGUGGa -5'
28058 3' -57.7 NC_005887.1 + 26344 0.67 0.465527
Target:  5'- cGCUGGCCG-GGUG-CGCGaacaUCACCg -3'
miRNA:   3'- -CGGCCGGCaUUACgGCGCag--AGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.