miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 19188 0.69 0.449603
Target:  5'- -cGGCGCGgGCGUGgagacaGGCGGCg -3'
miRNA:   3'- uaUCGCGCgCGCACagcaagCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 30630 0.68 0.480177
Target:  5'- --cGUGCGCGcCGUG-CGcgCGGCGAa -3'
miRNA:   3'- uauCGCGCGC-GCACaGCaaGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 27422 0.68 0.46987
Target:  5'- -cAGCGCGCgGCGUG-CG-UCGAUcGCg -3'
miRNA:   3'- uaUCGCGCG-CGCACaGCaAGCUGcUG- -5'
28058 5' -55.7 NC_005887.1 + 12705 0.69 0.449603
Target:  5'- --cGCGcCGCGCGUGa-GUgaCGACGGCg -3'
miRNA:   3'- uauCGC-GCGCGCACagCAa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 34141 0.69 0.420133
Target:  5'- -cAGCcCGCGCGUGUCGgugcgCGGguaGACa -3'
miRNA:   3'- uaUCGcGCGCGCACAGCaa---GCUg--CUG- -5'
28058 5' -55.7 NC_005887.1 + 12627 0.7 0.391863
Target:  5'- --cGCGCgGCGCGUGauccugCGacgCGACGGCg -3'
miRNA:   3'- uauCGCG-CGCGCACa-----GCaa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 32334 0.7 0.36486
Target:  5'- -cAGCGCggccGCGCGUGaUGUggUCGGCGAUc -3'
miRNA:   3'- uaUCGCG----CGCGCACaGCA--AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 27970 0.7 0.36486
Target:  5'- --cGCGCGCGCGc--CGagCGGCGACu -3'
miRNA:   3'- uauCGCGCGCGCacaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36919 0.7 0.36486
Target:  5'- -cAGCGgGCGCGUgGUCGcgccggUCGcuGCGGCg -3'
miRNA:   3'- uaUCGCgCGCGCA-CAGCa-----AGC--UGCUG- -5'
28058 5' -55.7 NC_005887.1 + 15316 0.67 0.544109
Target:  5'- -cAGCGUGCGCG-GUCGcgcgcUCGcCGAg -3'
miRNA:   3'- uaUCGCGCGCGCaCAGCa----AGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 29075 0.67 0.563856
Target:  5'- -cAGCGCcuGCGCcuuuGUGUCGaucggcaacgaaUCGACGGCg -3'
miRNA:   3'- uaUCGCG--CGCG----CACAGCa-----------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 29935 0.66 0.573802
Target:  5'- --cGCGCGCGCGgUGUCGUugcccugcugguacUgGuuGACg -3'
miRNA:   3'- uauCGCGCGCGC-ACAGCA--------------AgCugCUG- -5'
28058 5' -55.7 NC_005887.1 + 13629 1.07 0.000827
Target:  5'- gAUAGCGCGCGCGUGUCGUUCGACGACu -3'
miRNA:   3'- -UAUCGCGCGCGCACAGCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 8720 0.66 0.599387
Target:  5'- -cAGCGCGCGCuacgGgaaGUUCGAaGACc -3'
miRNA:   3'- uaUCGCGCGCGca--Cag-CAAGCUgCUG- -5'
28058 5' -55.7 NC_005887.1 + 40516 0.66 0.588238
Target:  5'- -cGGCGCGUuCGUGUCGccgaagaugccgUaccaggUCGGCGGCa -3'
miRNA:   3'- uaUCGCGCGcGCACAGC------------A------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 34268 0.66 0.588238
Target:  5'- --uGCGCGCGCGcuuUCGUgaaCGACcaGACg -3'
miRNA:   3'- uauCGCGCGCGCac-AGCAa--GCUG--CUG- -5'
28058 5' -55.7 NC_005887.1 + 26805 0.66 0.588238
Target:  5'- --cGCGCGCGCcgaGUCGUcgcccgUGACGAa -3'
miRNA:   3'- uauCGCGCGCGca-CAGCAa-----GCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 20550 0.66 0.588238
Target:  5'- -cAGCGC-CGCGgacGUCGUguugaugcCGGCGAUg -3'
miRNA:   3'- uaUCGCGcGCGCa--CAGCAa-------GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13943 0.66 0.588238
Target:  5'- --uGCGCGCGCucggcugcgacGUG-CGcgUGACGACa -3'
miRNA:   3'- uauCGCGCGCG-----------CACaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 38633 0.66 0.577126
Target:  5'- --uGCGCGgauCGCG-GUCGgcgcgcggcUCGACGGCg -3'
miRNA:   3'- uauCGCGC---GCGCaCAGCa--------AGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.