miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 32668 0.66 0.63297
Target:  5'- -cGGUGuCGCGCGUGcgCGcUUCGGCa-- -3'
miRNA:   3'- uaUCGC-GCGCGCACa-GC-AAGCUGcug -5'
28058 5' -55.7 NC_005887.1 + 6831 0.68 0.510664
Target:  5'- cGUGGCGCGgGUcugcaacaucgacGUGUCGgaccUCG-CGACg -3'
miRNA:   3'- -UAUCGCGCgCG-------------CACAGCa---AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 10642 0.67 0.52244
Target:  5'- -gGGCG-GCGuCGuUGggccaaCGUUCGACGACa -3'
miRNA:   3'- uaUCGCgCGC-GC-ACa-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 41952 0.67 0.566062
Target:  5'- -cGGCGUGCucGCGUGgugCGUgcgCGGCGcGCu -3'
miRNA:   3'- uaUCGCGCG--CGCACa--GCAa--GCUGC-UG- -5'
28058 5' -55.7 NC_005887.1 + 24118 0.66 0.577126
Target:  5'- --cGUGCuGCGCGUGUCGUgCGGugUGAa -3'
miRNA:   3'- uauCGCG-CGCGCACAGCAaGCU--GCUg -5'
28058 5' -55.7 NC_005887.1 + 40150 0.66 0.588238
Target:  5'- --uGCGCGCcgcgcucgccGCGUGUgagcUGcgCGACGGCa -3'
miRNA:   3'- uauCGCGCG----------CGCACA----GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36369 0.66 0.599387
Target:  5'- -gAGCGCGUGCuccUGaUCc-UCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGc--AC-AGcaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 39915 0.66 0.621763
Target:  5'- -cGGUGCGCGCagaUCGagccgggcgcgUCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGcacAGCa----------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 16937 0.66 0.621763
Target:  5'- -gGGCGCGaUGCGUGagcgcuucaacCGcgCGGCGGCa -3'
miRNA:   3'- uaUCGCGC-GCGCACa----------GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 41389 0.68 0.501112
Target:  5'- --cGUGCGCGaCGUGUUcucCGACGAUg -3'
miRNA:   3'- uauCGCGCGC-GCACAGcaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13377 0.68 0.494788
Target:  5'- gAUGGCGCucgcgcugaaggccgGCGCGg--CGgacgUCGGCGGCa -3'
miRNA:   3'- -UAUCGCG---------------CGCGCacaGCa---AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 26131 0.69 0.449603
Target:  5'- -cGGCGCGCuucguuucGCGg--CGcUCGACGACg -3'
miRNA:   3'- uaUCGCGCG--------CGCacaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 28293 0.73 0.256431
Target:  5'- -gAGCGCGCGCaGcGUCGU--GGCGACu -3'
miRNA:   3'- uaUCGCGCGCG-CaCAGCAagCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 37859 0.71 0.322788
Target:  5'- cGUAGCGgGCGCG-GUUGUUaGGCGGa -3'
miRNA:   3'- -UAUCGCgCGCGCaCAGCAAgCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 29516 0.7 0.372825
Target:  5'- -cGGCGgGCGCGUuguagaacagcacGUCGcgcgCGACGGCc -3'
miRNA:   3'- uaUCGCgCGCGCA-------------CAGCaa--GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 28920 0.7 0.382718
Target:  5'- --uGCGCGCGCccauUG-CG-UCGACGACa -3'
miRNA:   3'- uauCGCGCGCGc---ACaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36975 0.7 0.401148
Target:  5'- -cGGCGuCGCGCGgGUCGagcUCGcCGGCg -3'
miRNA:   3'- uaUCGC-GCGCGCaCAGCa--AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 15402 0.69 0.410573
Target:  5'- --cGCGCGCGgGcagCGgaucgUCGACGACg -3'
miRNA:   3'- uauCGCGCGCgCacaGCa----AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 7446 0.69 0.449603
Target:  5'- cUGGCGUGCGCGUcGUgaucggcaugcCGUUCG-CGAa -3'
miRNA:   3'- uAUCGCGCGCGCA-CA-----------GCAAGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 19188 0.69 0.449603
Target:  5'- -cGGCGCGgGCGUGgagacaGGCGGCg -3'
miRNA:   3'- uaUCGCGCgCGCACagcaagCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.