miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 13629 1.07 0.000827
Target:  5'- gAUAGCGCGCGCGUGUCGUUCGACGACu -3'
miRNA:   3'- -UAUCGCGCGCGCACAGCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 39913 0.78 0.118604
Target:  5'- cGUAGCGCGCGagGUGUCaUUCGuCGGCg -3'
miRNA:   3'- -UAUCGCGCGCg-CACAGcAAGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 33642 0.75 0.196256
Target:  5'- cGUAGCGCGCGC-UG-CGcUCGGCGAg -3'
miRNA:   3'- -UAUCGCGCGCGcACaGCaAGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 1072 0.74 0.207214
Target:  5'- -cAGCGCGCcCGUG-CGcaggUCGACGGCg -3'
miRNA:   3'- uaUCGCGCGcGCACaGCa---AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 28293 0.73 0.256431
Target:  5'- -gAGCGCGCGCaGcGUCGU--GGCGACu -3'
miRNA:   3'- uaUCGCGCGCG-CaCAGCAagCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 30304 0.71 0.314821
Target:  5'- -cAGCGCgGCGCcuGUGUUGUcuUCGACGGu -3'
miRNA:   3'- uaUCGCG-CGCG--CACAGCA--AGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 1440 0.71 0.314821
Target:  5'- --uGCGCGCGCG-GUagcccUUCGGCGGCu -3'
miRNA:   3'- uauCGCGCGCGCaCAgc---AAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 37859 0.71 0.322788
Target:  5'- cGUAGCGgGCGCG-GUUGUUaGGCGGa -3'
miRNA:   3'- -UAUCGCgCGCGCaCAGCAAgCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 31640 0.71 0.322788
Target:  5'- -cAGCGgcacCGCGCGguccaucgCGUUCGACGGCu -3'
miRNA:   3'- uaUCGC----GCGCGCaca-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 27970 0.7 0.36486
Target:  5'- --cGCGCGCGCGc--CGagCGGCGACu -3'
miRNA:   3'- uauCGCGCGCGCacaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36919 0.7 0.36486
Target:  5'- -cAGCGgGCGCGUgGUCGcgccggUCGcuGCGGCg -3'
miRNA:   3'- uaUCGCgCGCGCA-CAGCa-----AGC--UGCUG- -5'
28058 5' -55.7 NC_005887.1 + 32334 0.7 0.36486
Target:  5'- -cAGCGCggccGCGCGUGaUGUggUCGGCGAUc -3'
miRNA:   3'- uaUCGCG----CGCGCACaGCA--AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 29516 0.7 0.372825
Target:  5'- -cGGCGgGCGCGUuguagaacagcacGUCGcgcgCGACGGCc -3'
miRNA:   3'- uaUCGCgCGCGCA-------------CAGCaa--GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 28920 0.7 0.382718
Target:  5'- --uGCGCGCGCccauUG-CG-UCGACGACa -3'
miRNA:   3'- uauCGCGCGCGc---ACaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 12627 0.7 0.391863
Target:  5'- --cGCGCgGCGCGUGauccugCGacgCGACGGCg -3'
miRNA:   3'- uauCGCG-CGCGCACa-----GCaa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36975 0.7 0.401148
Target:  5'- -cGGCGuCGCGCGgGUCGagcUCGcCGGCg -3'
miRNA:   3'- uaUCGC-GCGCGCaCAGCa--AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 15402 0.69 0.410573
Target:  5'- --cGCGCGCGgGcagCGgaucgUCGACGACg -3'
miRNA:   3'- uauCGCGCGCgCacaGCa----AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 34141 0.69 0.420133
Target:  5'- -cAGCcCGCGCGUGUCGgugcgCGGguaGACa -3'
miRNA:   3'- uaUCGcGCGCGCACAGCaa---GCUg--CUG- -5'
28058 5' -55.7 NC_005887.1 + 26131 0.69 0.449603
Target:  5'- -cGGCGCGCuucguuucGCGg--CGcUCGACGACg -3'
miRNA:   3'- uaUCGCGCG--------CGCacaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 19188 0.69 0.449603
Target:  5'- -cGGCGCGgGCGUGgagacaGGCGGCg -3'
miRNA:   3'- uaUCGCGCgCGCACagcaagCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.