miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 1072 0.74 0.207214
Target:  5'- -cAGCGCGCcCGUG-CGcaggUCGACGGCg -3'
miRNA:   3'- uaUCGCGCGcGCACaGCa---AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 1440 0.71 0.314821
Target:  5'- --uGCGCGCGCG-GUagcccUUCGGCGGCu -3'
miRNA:   3'- uauCGCGCGCGCaCAgc---AAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 6831 0.68 0.510664
Target:  5'- cGUGGCGCGgGUcugcaacaucgacGUGUCGgaccUCG-CGACg -3'
miRNA:   3'- -UAUCGCGCgCG-------------CACAGCa---AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 7446 0.69 0.449603
Target:  5'- cUGGCGUGCGCGUcGUgaucggcaugcCGUUCG-CGAa -3'
miRNA:   3'- uAUCGCGCGCGCA-CA-----------GCAAGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 8720 0.66 0.599387
Target:  5'- -cAGCGCGCGCuacgGgaaGUUCGAaGACc -3'
miRNA:   3'- uaUCGCGCGCGca--Cag-CAAGCUgCUG- -5'
28058 5' -55.7 NC_005887.1 + 10642 0.67 0.52244
Target:  5'- -gGGCG-GCGuCGuUGggccaaCGUUCGACGACa -3'
miRNA:   3'- uaUCGCgCGC-GC-ACa-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 12627 0.7 0.391863
Target:  5'- --cGCGCgGCGCGUGauccugCGacgCGACGGCg -3'
miRNA:   3'- uauCGCG-CGCGCACa-----GCaa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 12705 0.69 0.449603
Target:  5'- --cGCGcCGCGCGUGa-GUgaCGACGGCg -3'
miRNA:   3'- uauCGC-GCGCGCACagCAa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13377 0.68 0.494788
Target:  5'- gAUGGCGCucgcgcugaaggccgGCGCGg--CGgacgUCGGCGGCa -3'
miRNA:   3'- -UAUCGCG---------------CGCGCacaGCa---AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13629 1.07 0.000827
Target:  5'- gAUAGCGCGCGCGUGUCGUUCGACGACu -3'
miRNA:   3'- -UAUCGCGCGCGCACAGCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13943 0.66 0.588238
Target:  5'- --uGCGCGCGCucggcugcgacGUG-CGcgUGACGACa -3'
miRNA:   3'- uauCGCGCGCG-----------CACaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 15316 0.67 0.544109
Target:  5'- -cAGCGUGCGCG-GUCGcgcgcUCGcCGAg -3'
miRNA:   3'- uaUCGCGCGCGCaCAGCa----AGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 15402 0.69 0.410573
Target:  5'- --cGCGCGCGgGcagCGgaucgUCGACGACg -3'
miRNA:   3'- uauCGCGCGCgCacaGCa----AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 16937 0.66 0.621763
Target:  5'- -gGGCGCGaUGCGUGagcgcuucaacCGcgCGGCGGCa -3'
miRNA:   3'- uaUCGCGC-GCGCACa----------GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 19188 0.69 0.449603
Target:  5'- -cGGCGCGgGCGUGgagacaGGCGGCg -3'
miRNA:   3'- uaUCGCGCgCGCACagcaagCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 20550 0.66 0.588238
Target:  5'- -cAGCGC-CGCGgacGUCGUguugaugcCGGCGAUg -3'
miRNA:   3'- uaUCGCGcGCGCa--CAGCAa-------GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 24118 0.66 0.577126
Target:  5'- --cGUGCuGCGCGUGUCGUgCGGugUGAa -3'
miRNA:   3'- uauCGCG-CGCGCACAGCAaGCU--GCUg -5'
28058 5' -55.7 NC_005887.1 + 26131 0.69 0.449603
Target:  5'- -cGGCGCGCuucguuucGCGg--CGcUCGACGACg -3'
miRNA:   3'- uaUCGCGCG--------CGCacaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 26805 0.66 0.588238
Target:  5'- --cGCGCGCGCcgaGUCGUcgcccgUGACGAa -3'
miRNA:   3'- uauCGCGCGCGca-CAGCAa-----GCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 27422 0.68 0.46987
Target:  5'- -cAGCGCGCgGCGUG-CG-UCGAUcGCg -3'
miRNA:   3'- uaUCGCGCG-CGCACaGCaAGCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.