miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 41952 0.67 0.566062
Target:  5'- -cGGCGUGCucGCGUGgugCGUgcgCGGCGcGCu -3'
miRNA:   3'- uaUCGCGCG--CGCACa--GCAa--GCUGC-UG- -5'
28058 5' -55.7 NC_005887.1 + 41389 0.68 0.501112
Target:  5'- --cGUGCGCGaCGUGUUcucCGACGAUg -3'
miRNA:   3'- uauCGCGCGC-GCACAGcaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 40516 0.66 0.588238
Target:  5'- -cGGCGCGUuCGUGUCGccgaagaugccgUaccaggUCGGCGGCa -3'
miRNA:   3'- uaUCGCGCGcGCACAGC------------A------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 40150 0.66 0.588238
Target:  5'- --uGCGCGCcgcgcucgccGCGUGUgagcUGcgCGACGGCa -3'
miRNA:   3'- uauCGCGCG----------CGCACA----GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 39915 0.66 0.621763
Target:  5'- -cGGUGCGCGCagaUCGagccgggcgcgUCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGcacAGCa----------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 39913 0.78 0.118604
Target:  5'- cGUAGCGCGCGagGUGUCaUUCGuCGGCg -3'
miRNA:   3'- -UAUCGCGCGCg-CACAGcAAGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 38633 0.66 0.577126
Target:  5'- --uGCGCGgauCGCG-GUCGgcgcgcggcUCGACGGCg -3'
miRNA:   3'- uauCGCGC---GCGCaCAGCa--------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 37859 0.71 0.322788
Target:  5'- cGUAGCGgGCGCG-GUUGUUaGGCGGa -3'
miRNA:   3'- -UAUCGCgCGCGCaCAGCAAgCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 36975 0.7 0.401148
Target:  5'- -cGGCGuCGCGCGgGUCGagcUCGcCGGCg -3'
miRNA:   3'- uaUCGC-GCGCGCaCAGCa--AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36919 0.7 0.36486
Target:  5'- -cAGCGgGCGCGUgGUCGcgccggUCGcuGCGGCg -3'
miRNA:   3'- uaUCGCgCGCGCA-CAGCa-----AGC--UGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36369 0.66 0.599387
Target:  5'- -gAGCGCGUGCuccUGaUCc-UCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGc--AC-AGcaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 34268 0.66 0.588238
Target:  5'- --uGCGCGCGCGcuuUCGUgaaCGACcaGACg -3'
miRNA:   3'- uauCGCGCGCGCac-AGCAa--GCUG--CUG- -5'
28058 5' -55.7 NC_005887.1 + 34141 0.69 0.420133
Target:  5'- -cAGCcCGCGCGUGUCGgugcgCGGguaGACa -3'
miRNA:   3'- uaUCGcGCGCGCACAGCaa---GCUg--CUG- -5'
28058 5' -55.7 NC_005887.1 + 33642 0.75 0.196256
Target:  5'- cGUAGCGCGCGC-UG-CGcUCGGCGAg -3'
miRNA:   3'- -UAUCGCGCGCGcACaGCaAGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 32668 0.66 0.63297
Target:  5'- -cGGUGuCGCGCGUGcgCGcUUCGGCa-- -3'
miRNA:   3'- uaUCGC-GCGCGCACa-GC-AAGCUGcug -5'
28058 5' -55.7 NC_005887.1 + 32334 0.7 0.36486
Target:  5'- -cAGCGCggccGCGCGUGaUGUggUCGGCGAUc -3'
miRNA:   3'- uaUCGCG----CGCGCACaGCA--AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 31640 0.71 0.322788
Target:  5'- -cAGCGgcacCGCGCGguccaucgCGUUCGACGGCu -3'
miRNA:   3'- uaUCGC----GCGCGCaca-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 30630 0.68 0.480177
Target:  5'- --cGUGCGCGcCGUG-CGcgCGGCGAa -3'
miRNA:   3'- uauCGCGCGC-GCACaGCaaGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 30304 0.71 0.314821
Target:  5'- -cAGCGCgGCGCcuGUGUUGUcuUCGACGGu -3'
miRNA:   3'- uaUCGCG-CGCG--CACAGCA--AGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 29935 0.66 0.573802
Target:  5'- --cGCGCGCGCGgUGUCGUugcccugcugguacUgGuuGACg -3'
miRNA:   3'- uauCGCGCGCGC-ACAGCA--------------AgCugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.