Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 5173 | 0.67 | 0.944232 |
Target: 5'- gGACGCCgAGC-CGAcGCaGGAGAACGu -3' miRNA: 3'- gUUGUGGaUUGuGCU-UG-CCUCUUGCu -5' |
|||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 21382 | 0.66 | 0.962348 |
Target: 5'- uGGCGCCaAGCGCcAGCGcGGGAACa- -3' miRNA: 3'- gUUGUGGaUUGUGcUUGC-CUCUUGcu -5' |
|||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 27860 | 0.66 | 0.966145 |
Target: 5'- aAGCACCgcggcgGGCACGAucuGCGcGAGGcccgacACGAc -3' miRNA: 3'- gUUGUGGa-----UUGUGCU---UGC-CUCU------UGCU- -5' |
|||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 14353 | 0.66 | 0.971966 |
Target: 5'- aAACGCCggccgacGACGCGAuucggcccgagccgGCGGcggcaAGAGCGAu -3' miRNA: 3'- gUUGUGGa------UUGUGCU--------------UGCC-----UCUUGCU- -5' |
|||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 13103 | 1.1 | 0.004439 |
Target: 5'- gCAACACCUAACACGAACGGAGAACGAc -3' miRNA: 3'- -GUUGUGGAUUGUGCUUGCCUCUUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home