miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 14594 0.68 0.425698
Target:  5'- cUCGCcggcGCGCUCGGCAUCGgccacuUCCg -3'
miRNA:   3'- aAGCGc---CGCGAGCUGUGGCagcu--AGG- -5'
28063 5' -57.7 NC_005887.1 + 27403 0.68 0.425698
Target:  5'- gUUGCGGCGCgUCGuacggcagcGCGCggcgugCGUCGAUCg -3'
miRNA:   3'- aAGCGCCGCG-AGC---------UGUG------GCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 14558 0.68 0.425698
Target:  5'- cUCGCcuGCG-UCGGCGCCGUCG-UCa -3'
miRNA:   3'- aAGCGc-CGCgAGCUGUGGCAGCuAGg -5'
28063 5' -57.7 NC_005887.1 + 26407 0.68 0.416261
Target:  5'- -gUGCGGCGCguggcCGGCGCa-UCGAUuCCg -3'
miRNA:   3'- aaGCGCCGCGa----GCUGUGgcAGCUA-GG- -5'
28063 5' -57.7 NC_005887.1 + 41818 0.68 0.416261
Target:  5'- -gCGCGGCGCgCGGCgGCCGacgcguucagaUCGA-CCa -3'
miRNA:   3'- aaGCGCCGCGaGCUG-UGGC-----------AGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 24910 0.68 0.416261
Target:  5'- cUUCGCaGCaGCcggaUCGGCACCGuugUCGAUCg -3'
miRNA:   3'- -AAGCGcCG-CG----AGCUGUGGC---AGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 23997 0.68 0.41066
Target:  5'- --gGCGGCGCUCGggaaucuccugccgcACAUCGUaaAUCCc -3'
miRNA:   3'- aagCGCCGCGAGC---------------UGUGGCAgcUAGG- -5'
28063 5' -57.7 NC_005887.1 + 8683 0.68 0.406952
Target:  5'- aUCGCgacGGUGCagGGC-CCGgCGAUCCg -3'
miRNA:   3'- aAGCG---CCGCGagCUGuGGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 5369 0.68 0.406952
Target:  5'- cUCGcCGGCgaGCUCGAC-CCGcgCGAcgCCg -3'
miRNA:   3'- aAGC-GCCG--CGAGCUGuGGCa-GCUa-GG- -5'
28063 5' -57.7 NC_005887.1 + 39107 0.68 0.406952
Target:  5'- -gCGCaGCGCgagCGGCGCgGUCGAaUCg -3'
miRNA:   3'- aaGCGcCGCGa--GCUGUGgCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 14532 0.68 0.397774
Target:  5'- -gCGCGGCcgUCGGCgGCgCGUCGAUCg -3'
miRNA:   3'- aaGCGCCGcgAGCUG-UG-GCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 1491 0.68 0.379824
Target:  5'- -gUGCGGCGCUCG-CGCgGcgCGG-CCg -3'
miRNA:   3'- aaGCGCCGCGAGCuGUGgCa-GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 26028 0.68 0.379824
Target:  5'- gUUCGCGGCGacCUCGAacagGCCGgCG-UCCu -3'
miRNA:   3'- -AAGCGCCGC--GAGCUg---UGGCaGCuAGG- -5'
28063 5' -57.7 NC_005887.1 + 15842 0.68 0.379824
Target:  5'- -cUGCaGGCGCUCGAggaaAUCGUCGAggaagcggCCg -3'
miRNA:   3'- aaGCG-CCGCGAGCUg---UGGCAGCUa-------GG- -5'
28063 5' -57.7 NC_005887.1 + 34870 0.69 0.362424
Target:  5'- aUCGCGGC-CUCGAuCGCCuuGUCGuUCg -3'
miRNA:   3'- aAGCGCCGcGAGCU-GUGG--CAGCuAGg -5'
28063 5' -57.7 NC_005887.1 + 30728 0.69 0.353934
Target:  5'- gUCGCGcuGCGUggccuucgCGACuucGCCGUCGGUCa -3'
miRNA:   3'- aAGCGC--CGCGa-------GCUG---UGGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 33714 0.69 0.345585
Target:  5'- -gCGCGGCGgUCGAU-CUGcUCGAUCg -3'
miRNA:   3'- aaGCGCCGCgAGCUGuGGC-AGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 23945 0.69 0.345585
Target:  5'- cUCGCGGCGUcugCGcacGCACCGaCGA-CCu -3'
miRNA:   3'- aAGCGCCGCGa--GC---UGUGGCaGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 36060 0.69 0.345585
Target:  5'- cUCGaC-GCGCUCGcgcACGCCGUCGAUg- -3'
miRNA:   3'- aAGC-GcCGCGAGC---UGUGGCAGCUAgg -5'
28063 5' -57.7 NC_005887.1 + 7210 0.69 0.337379
Target:  5'- cUCGCGuGCGCa-GGCGCUGUCGGcgUCg -3'
miRNA:   3'- aAGCGC-CGCGagCUGUGGCAGCU--AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.