miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 14702 0.66 0.505439
Target:  5'- gUCGCGGCGggCGG-GCCGggcgcggCGAUCg -3'
miRNA:   3'- aAGCGCCGCgaGCUgUGGCa------GCUAGg -5'
28063 5' -57.7 NC_005887.1 + 41709 0.66 0.502327
Target:  5'- -gCGCGuGCGCUCGcCGCgCGcuuucaucgcggcuUCGAUCUu -3'
miRNA:   3'- aaGCGC-CGCGAGCuGUG-GC--------------AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 17672 0.66 0.495098
Target:  5'- cUCGCcGCGCUUGGCGaCGUCGGc-- -3'
miRNA:   3'- aAGCGcCGCGAGCUGUgGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 29977 0.66 0.495098
Target:  5'- -cCGCcGCGCg-GAUGCUGUCGAggUCCa -3'
miRNA:   3'- aaGCGcCGCGagCUGUGGCAGCU--AGG- -5'
28063 5' -57.7 NC_005887.1 + 22777 0.67 0.484855
Target:  5'- cUCGuuG-GCUCGACGCCGgcgCGG-CCg -3'
miRNA:   3'- aAGCgcCgCGAGCUGUGGCa--GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 1498 0.67 0.484855
Target:  5'- -gCGCGGCgGCUU--CGCCGgUgGAUCCg -3'
miRNA:   3'- aaGCGCCG-CGAGcuGUGGC-AgCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 41290 0.67 0.484855
Target:  5'- -aCGCGGUcCuUCGACugCGUCuuGAUCUc -3'
miRNA:   3'- aaGCGCCGcG-AGCUGugGCAG--CUAGG- -5'
28063 5' -57.7 NC_005887.1 + 10050 0.67 0.484855
Target:  5'- -cUGCGGCGCgcCGGCuggcCCGaCGAUCg -3'
miRNA:   3'- aaGCGCCGCGa-GCUGu---GGCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 16186 0.67 0.484855
Target:  5'- aUCGCGcGCGacacgaUCGACGaggacgUCGUCGAgcgCCg -3'
miRNA:   3'- aAGCGC-CGCg-----AGCUGU------GGCAGCUa--GG- -5'
28063 5' -57.7 NC_005887.1 + 3841 0.67 0.483836
Target:  5'- aUCG-GGCGCuucuacgUCGGCACCGaCGAUg- -3'
miRNA:   3'- aAGCgCCGCG-------AGCUGUGGCaGCUAgg -5'
28063 5' -57.7 NC_005887.1 + 40014 0.67 0.474713
Target:  5'- gUCGCGGUGCgcaucaUGGCGCgGcUCGAggcggCCg -3'
miRNA:   3'- aAGCGCCGCGa-----GCUGUGgC-AGCUa----GG- -5'
28063 5' -57.7 NC_005887.1 + 2534 0.67 0.474713
Target:  5'- -aCGCuGCGCaaGGCGCUGUCGGgcggcuacugcuUCCg -3'
miRNA:   3'- aaGCGcCGCGagCUGUGGCAGCU------------AGG- -5'
28063 5' -57.7 NC_005887.1 + 21227 0.67 0.464679
Target:  5'- aUUCGUGGCGUuggCGAgCACCGUguuugcggcgacCGcgCCg -3'
miRNA:   3'- -AAGCGCCGCGa--GCU-GUGGCA------------GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 20499 0.67 0.464679
Target:  5'- --gGCGGCGUguUUGACACCGUUu-UCUc -3'
miRNA:   3'- aagCGCCGCG--AGCUGUGGCAGcuAGG- -5'
28063 5' -57.7 NC_005887.1 + 8404 0.67 0.454757
Target:  5'- -aCGCGacGUGCUCGccgaGCGCCGUCGGc-- -3'
miRNA:   3'- aaGCGC--CGCGAGC----UGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 39410 0.67 0.44495
Target:  5'- gUCGCGaccGCGUUCGGCAUCucgCGAaucUCCa -3'
miRNA:   3'- aAGCGC---CGCGAGCUGUGGca-GCU---AGG- -5'
28063 5' -57.7 NC_005887.1 + 29135 0.67 0.44495
Target:  5'- cUCGUcuGGCGUcagcagCGACACaCGUCGG-CCg -3'
miRNA:   3'- aAGCG--CCGCGa-----GCUGUG-GCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 14070 0.67 0.44495
Target:  5'- -cUGCGcGCGCUCGGCguGCCGaUGAUgCu -3'
miRNA:   3'- aaGCGC-CGCGAGCUG--UGGCaGCUAgG- -5'
28063 5' -57.7 NC_005887.1 + 2970 0.67 0.435263
Target:  5'- cUCGcCGGCGaCUCcACGuCCGUCGuucuucGUCCg -3'
miRNA:   3'- aAGC-GCCGC-GAGcUGU-GGCAGC------UAGG- -5'
28063 5' -57.7 NC_005887.1 + 17229 0.67 0.435263
Target:  5'- -cUGCGGCGCUgGAUcucggccggacaACCGgucgCGAaaUCCg -3'
miRNA:   3'- aaGCGCCGCGAgCUG------------UGGCa---GCU--AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.