miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 8613 0.66 0.515872
Target:  5'- cUCGCcGuUGCUCGguGCACgUGUCGAUCUg -3'
miRNA:   3'- aAGCGcC-GCGAGC--UGUG-GCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 8683 0.68 0.406952
Target:  5'- aUCGCgacGGUGCagGGC-CCGgCGAUCCg -3'
miRNA:   3'- aAGCG---CCGCGagCUGuGGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 8861 0.66 0.520069
Target:  5'- -aCGcCGGCGCgcccgucgagaucgCGACGCCGUaCGcgCUc -3'
miRNA:   3'- aaGC-GCCGCGa-------------GCUGUGGCA-GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 10050 0.67 0.484855
Target:  5'- -cUGCGGCGCgcCGGCuggcCCGaCGAUCg -3'
miRNA:   3'- aaGCGCCGCGa-GCUGu---GGCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 10482 0.66 0.547659
Target:  5'- -gCGCGaucaCGCUCGACugguCCGcaUCGAUCg -3'
miRNA:   3'- aaGCGCc---GCGAGCUGu---GGC--AGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 11778 0.74 0.163486
Target:  5'- cUCgGCGGCguccucgcuGCUCGGCGgCGUCGGUUCg -3'
miRNA:   3'- aAG-CGCCG---------CGAGCUGUgGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 12243 0.7 0.298493
Target:  5'- -aCG-GGCGUUCGGCguaGCCGUCGAagCg -3'
miRNA:   3'- aaGCgCCGCGAGCUG---UGGCAGCUagG- -5'
28063 5' -57.7 NC_005887.1 + 12399 1.08 0.000516
Target:  5'- gUUCGCGGCGCUCGACACCGUCGAUCCc -3'
miRNA:   3'- -AAGCGCCGCGAGCUGUGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 14070 0.67 0.44495
Target:  5'- -cUGCGcGCGCUCGGCguGCCGaUGAUgCu -3'
miRNA:   3'- aaGCGC-CGCGAGCUG--UGGCaGCUAgG- -5'
28063 5' -57.7 NC_005887.1 + 14532 0.68 0.397774
Target:  5'- -gCGCGGCcgUCGGCgGCgCGUCGAUCg -3'
miRNA:   3'- aaGCGCCGcgAGCUG-UG-GCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 14558 0.68 0.425698
Target:  5'- cUCGCcuGCG-UCGGCGCCGUCG-UCa -3'
miRNA:   3'- aAGCGc-CGCgAGCUGUGGCAGCuAGg -5'
28063 5' -57.7 NC_005887.1 + 14594 0.68 0.425698
Target:  5'- cUCGCcggcGCGCUCGGCAUCGgccacuUCCg -3'
miRNA:   3'- aAGCGc---CGCGAGCUGUGGCagcu--AGG- -5'
28063 5' -57.7 NC_005887.1 + 14702 0.66 0.505439
Target:  5'- gUCGCGGCGggCGG-GCCGggcgcggCGAUCg -3'
miRNA:   3'- aAGCGCCGCgaGCUgUGGCa------GCUAGg -5'
28063 5' -57.7 NC_005887.1 + 15842 0.68 0.379824
Target:  5'- -cUGCaGGCGCUCGAggaaAUCGUCGAggaagcggCCg -3'
miRNA:   3'- aaGCG-CCGCGAGCUg---UGGCAGCUa-------GG- -5'
28063 5' -57.7 NC_005887.1 + 15943 0.72 0.219519
Target:  5'- -gCGCGGCcgccaGCUCGACcagaACCGcagaCGAUCCg -3'
miRNA:   3'- aaGCGCCG-----CGAGCUG----UGGCa---GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 16186 0.67 0.484855
Target:  5'- aUCGCGcGCGacacgaUCGACGaggacgUCGUCGAgcgCCg -3'
miRNA:   3'- aAGCGC-CGCg-----AGCUGU------GGCAGCUa--GG- -5'
28063 5' -57.7 NC_005887.1 + 16963 0.66 0.512732
Target:  5'- -gCGCGGCggcaaugucggcgaGCUCGACuacggcuaCGUgcCGAUCCg -3'
miRNA:   3'- aaGCGCCG--------------CGAGCUGug------GCA--GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 17229 0.67 0.435263
Target:  5'- -cUGCGGCGCUgGAUcucggccggacaACCGgucgCGAaaUCCg -3'
miRNA:   3'- aaGCGCCGCGAgCUG------------UGGCa---GCU--AGG- -5'
28063 5' -57.7 NC_005887.1 + 17672 0.66 0.495098
Target:  5'- cUCGCcGCGCUUGGCGaCGUCGGc-- -3'
miRNA:   3'- aAGCGcCGCGAGCUGUgGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 18413 0.71 0.276876
Target:  5'- -cCGCGGCGCUCGucgucagcacgACGCUGaucggcgCGAUCUc -3'
miRNA:   3'- aaGCGCCGCGAGC-----------UGUGGCa------GCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.