miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 262 0.72 0.23742
Target:  5'- -aCGCGGCaucGCgccccacgCGACAgcgcUCGUCGAUCCa -3'
miRNA:   3'- aaGCGCCG---CGa-------GCUGU----GGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 315 0.66 0.547659
Target:  5'- -cCGCGGUGCgcgCGuACACCGagGAa-- -3'
miRNA:   3'- aaGCGCCGCGa--GC-UGUGGCagCUagg -5'
28063 5' -57.7 NC_005887.1 + 830 0.7 0.291145
Target:  5'- cUCGCGGaucuuGC-CGAgCACCGUCGAcuugCCg -3'
miRNA:   3'- aAGCGCCg----CGaGCU-GUGGCAGCUa---GG- -5'
28063 5' -57.7 NC_005887.1 + 1445 0.66 0.547659
Target:  5'- -gCGCGGUagcccuucggcgGCUCGucguCACCGUCGcguuUCUu -3'
miRNA:   3'- aaGCGCCG------------CGAGCu---GUGGCAGCu---AGG- -5'
28063 5' -57.7 NC_005887.1 + 1491 0.68 0.379824
Target:  5'- -gUGCGGCGCUCG-CGCgGcgCGG-CCg -3'
miRNA:   3'- aaGCGCCGCGAGCuGUGgCa-GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 1498 0.67 0.484855
Target:  5'- -gCGCGGCgGCUU--CGCCGgUgGAUCCg -3'
miRNA:   3'- aaGCGCCG-CGAGcuGUGGC-AgCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 1588 0.66 0.547659
Target:  5'- cUCgGCGGCGCgCGGCGCgccaaCGgCGAUCg -3'
miRNA:   3'- aAG-CGCCGCGaGCUGUG-----GCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 2449 0.78 0.091001
Target:  5'- cUCGCuGCGCUaCGGCGCCGUCGAc-- -3'
miRNA:   3'- aAGCGcCGCGA-GCUGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 2534 0.67 0.474713
Target:  5'- -aCGCuGCGCaaGGCGCUGUCGGgcggcuacugcuUCCg -3'
miRNA:   3'- aaGCGcCGCGagCUGUGGCAGCU------------AGG- -5'
28063 5' -57.7 NC_005887.1 + 2970 0.67 0.435263
Target:  5'- cUCGcCGGCGaCUCcACGuCCGUCGuucuucGUCCg -3'
miRNA:   3'- aAGC-GCCGC-GAGcUGU-GGCAGC------UAGG- -5'
28063 5' -57.7 NC_005887.1 + 3841 0.67 0.483836
Target:  5'- aUCG-GGCGCuucuacgUCGGCACCGaCGAUg- -3'
miRNA:   3'- aAGCgCCGCG-------AGCUGUGGCaGCUAgg -5'
28063 5' -57.7 NC_005887.1 + 3945 0.7 0.313617
Target:  5'- -cCGCGGCGCgcaGAaGCuCGUCGAcCCg -3'
miRNA:   3'- aaGCGCCGCGag-CUgUG-GCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 4624 0.71 0.256528
Target:  5'- -cCGCGGCGC-CGGuggcCGCCGgcgCGAUCa -3'
miRNA:   3'- aaGCGCCGCGaGCU----GUGGCa--GCUAGg -5'
28063 5' -57.7 NC_005887.1 + 5369 0.68 0.406952
Target:  5'- cUCGcCGGCgaGCUCGAC-CCGcgCGAcgCCg -3'
miRNA:   3'- aAGC-GCCG--CGAGCUGuGGCa-GCUa-GG- -5'
28063 5' -57.7 NC_005887.1 + 6040 0.66 0.52639
Target:  5'- -gCGCGGCG-UCGAcCGCCGcgcaGAUCg -3'
miRNA:   3'- aaGCGCCGCgAGCU-GUGGCag--CUAGg -5'
28063 5' -57.7 NC_005887.1 + 6135 0.71 0.263171
Target:  5'- cUCGaaaGcGUGCUCGACGCCGaaUCGuUCCu -3'
miRNA:   3'- aAGCg--C-CGCGAGCUGUGGC--AGCuAGG- -5'
28063 5' -57.7 NC_005887.1 + 7030 0.7 0.321395
Target:  5'- -cCGCGGCGCgCGGCAgUGgagCGAUgCa -3'
miRNA:   3'- aaGCGCCGCGaGCUGUgGCa--GCUAgG- -5'
28063 5' -57.7 NC_005887.1 + 7130 0.73 0.202782
Target:  5'- --gGCGGCGCUgCGGCGCCGUUcaacuucUCCg -3'
miRNA:   3'- aagCGCCGCGA-GCUGUGGCAGcu-----AGG- -5'
28063 5' -57.7 NC_005887.1 + 7210 0.69 0.337379
Target:  5'- cUCGCGuGCGCa-GGCGCUGUCGGcgUCg -3'
miRNA:   3'- aAGCGC-CGCGagCUGUGGCAGCU--AGg -5'
28063 5' -57.7 NC_005887.1 + 8404 0.67 0.454757
Target:  5'- -aCGCGacGUGCUCGccgaGCGCCGUCGGc-- -3'
miRNA:   3'- aaGCGC--CGCGAGC----UGUGGCAGCUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.