miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 12399 1.08 0.000516
Target:  5'- gUUCGCGGCGCUCGACACCGUCGAUCCc -3'
miRNA:   3'- -AAGCGCCGCGAGCUGUGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 26143 0.88 0.015806
Target:  5'- uUUCGCGGCGCUCGACGacguccUCGUCGAUCg -3'
miRNA:   3'- -AAGCGCCGCGAGCUGU------GGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 36314 0.87 0.020623
Target:  5'- -gCGCGGCGgUCGACGCCGcgcacUCGAUCCa -3'
miRNA:   3'- aaGCGCCGCgAGCUGUGGC-----AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 32742 0.79 0.074509
Target:  5'- -gCGCGGCGCUCGcgugcGCGCCGgcgCGcgCCa -3'
miRNA:   3'- aaGCGCCGCGAGC-----UGUGGCa--GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 2449 0.78 0.091001
Target:  5'- cUCGCuGCGCUaCGGCGCCGUCGAc-- -3'
miRNA:   3'- aAGCGcCGCGA-GCUGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 39778 0.77 0.096318
Target:  5'- gUCGCGGCGCUCG-CGCCGaUCGuUgCg -3'
miRNA:   3'- aAGCGCCGCGAGCuGUGGC-AGCuAgG- -5'
28063 5' -57.7 NC_005887.1 + 25919 0.77 0.099085
Target:  5'- -aCGCGGUuCUCGAUcCCGUCGAUCUc -3'
miRNA:   3'- aaGCGCCGcGAGCUGuGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 27356 0.75 0.150605
Target:  5'- --aGCGGCGCgcagacgagcgUCGGCAUCGucUCGAUCCc -3'
miRNA:   3'- aagCGCCGCG-----------AGCUGUGGC--AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 28834 0.75 0.151019
Target:  5'- aUCGUGGCGCgcaugcccgugccggCGACcUCGUCGAUCUu -3'
miRNA:   3'- aAGCGCCGCGa--------------GCUGuGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 11778 0.74 0.163486
Target:  5'- cUCgGCGGCguccucgcuGCUCGGCGgCGUCGGUUCg -3'
miRNA:   3'- aAG-CGCCG---------CGAGCUGUgGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 33408 0.74 0.172616
Target:  5'- aUCGCGGUGCguaGAUACCG-CGA-CCg -3'
miRNA:   3'- aAGCGCCGCGag-CUGUGGCaGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 33943 0.74 0.172616
Target:  5'- -cCGaCGGCGCUCGGCGagcaCGUCGcgugcggcGUCCg -3'
miRNA:   3'- aaGC-GCCGCGAGCUGUg---GCAGC--------UAGG- -5'
28063 5' -57.7 NC_005887.1 + 35648 0.73 0.197455
Target:  5'- --aGCGGUgcgaGCUCGACGCUGUCGAc-- -3'
miRNA:   3'- aagCGCCG----CGAGCUGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 7130 0.73 0.202782
Target:  5'- --gGCGGCGCUgCGGCGCCGUUcaacuucUCCg -3'
miRNA:   3'- aagCGCCGCGA-GCUGUGGCAGcu-----AGG- -5'
28063 5' -57.7 NC_005887.1 + 15943 0.72 0.219519
Target:  5'- -gCGCGGCcgccaGCUCGACcagaACCGcagaCGAUCCg -3'
miRNA:   3'- aaGCGCCG-----CGAGCUG----UGGCa---GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 39454 0.72 0.219519
Target:  5'- gUUCGCGGCgGC-CGACGuguCCGUCGucgCCu -3'
miRNA:   3'- -AAGCGCCG-CGaGCUGU---GGCAGCua-GG- -5'
28063 5' -57.7 NC_005887.1 + 41958 0.72 0.225354
Target:  5'- cUUCGCGGCGCUUG-C-CCGUCuuUUCg -3'
miRNA:   3'- -AAGCGCCGCGAGCuGuGGCAGcuAGG- -5'
28063 5' -57.7 NC_005887.1 + 262 0.72 0.23742
Target:  5'- -aCGCGGCaucGCgccccacgCGACAgcgcUCGUCGAUCCa -3'
miRNA:   3'- aaGCGCCG---CGa-------GCUGU----GGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 40528 0.72 0.243653
Target:  5'- -aCGCGGCGCgCGGCAgCGacgaCGGUCUg -3'
miRNA:   3'- aaGCGCCGCGaGCUGUgGCa---GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 4624 0.71 0.256528
Target:  5'- -cCGCGGCGC-CGGuggcCGCCGgcgCGAUCa -3'
miRNA:   3'- aaGCGCCGCGaGCU----GUGGCa--GCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.