miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 6135 0.71 0.263171
Target:  5'- cUCGaaaGcGUGCUCGACGCCGaaUCGuUCCu -3'
miRNA:   3'- aAGCg--C-CGCGAGCUGUGGC--AGCuAGG- -5'
28063 5' -57.7 NC_005887.1 + 25668 0.71 0.263171
Target:  5'- -cCGCaGCGCgUCGcCAUCGUCGGUCa -3'
miRNA:   3'- aaGCGcCGCG-AGCuGUGGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 40870 0.71 0.269954
Target:  5'- -gCGCGaGCGC-CGcACGCCGUCGGcgucgggcUCCu -3'
miRNA:   3'- aaGCGC-CGCGaGC-UGUGGCAGCU--------AGG- -5'
28063 5' -57.7 NC_005887.1 + 34727 0.71 0.274785
Target:  5'- -gCGCGGCGauguacauguugccUUCGAaGCCGUCGAagUCCu -3'
miRNA:   3'- aaGCGCCGC--------------GAGCUgUGGCAGCU--AGG- -5'
28063 5' -57.7 NC_005887.1 + 18413 0.71 0.276876
Target:  5'- -cCGCGGCGCUCGucgucagcacgACGCUGaucggcgCGAUCUc -3'
miRNA:   3'- aaGCGCCGCGAGC-----------UGUGGCa------GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 31038 0.71 0.28394
Target:  5'- gUUGCGGCGCUCGcUGCCGagcCGG-CCg -3'
miRNA:   3'- aAGCGCCGCGAGCuGUGGCa--GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 36168 0.7 0.291145
Target:  5'- gUCGCGGCGCgu--CACCGUgcCGA-CCg -3'
miRNA:   3'- aAGCGCCGCGagcuGUGGCA--GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 830 0.7 0.291145
Target:  5'- cUCGCGGaucuuGC-CGAgCACCGUCGAcuugCCg -3'
miRNA:   3'- aAGCGCCg----CGaGCU-GUGGCAGCUa---GG- -5'
28063 5' -57.7 NC_005887.1 + 12243 0.7 0.298493
Target:  5'- -aCG-GGCGUUCGGCguaGCCGUCGAagCg -3'
miRNA:   3'- aaGCgCCGCGAGCUG---UGGCAGCUagG- -5'
28063 5' -57.7 NC_005887.1 + 37446 0.7 0.298493
Target:  5'- -gCGCGGCGCUUGcCugCG-CGGUUUg -3'
miRNA:   3'- aaGCGCCGCGAGCuGugGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 29402 0.7 0.298493
Target:  5'- -gCGCGGUcgcgaucagGCUCGACAgcUCGUCGG-CCg -3'
miRNA:   3'- aaGCGCCG---------CGAGCUGU--GGCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 23608 0.7 0.305984
Target:  5'- --aGUGGCGUguUCGACugCG-CGAUCUu -3'
miRNA:   3'- aagCGCCGCG--AGCUGugGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 41518 0.7 0.313617
Target:  5'- gUCGaCGGUGCUCGGCAa----GAUCCg -3'
miRNA:   3'- aAGC-GCCGCGAGCUGUggcagCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 28627 0.7 0.313617
Target:  5'- aUCGCGacgaUGUUCGGCuuGCCGUUGAUCUg -3'
miRNA:   3'- aAGCGCc---GCGAGCUG--UGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 3945 0.7 0.313617
Target:  5'- -cCGCGGCGCgcaGAaGCuCGUCGAcCCg -3'
miRNA:   3'- aaGCGCCGCGag-CUgUG-GCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 7030 0.7 0.321395
Target:  5'- -cCGCGGCGCgCGGCAgUGgagCGAUgCa -3'
miRNA:   3'- aaGCGCCGCGaGCUGUgGCa--GCUAgG- -5'
28063 5' -57.7 NC_005887.1 + 27238 0.69 0.336566
Target:  5'- aUCGCGGCGCaacugcaUCGcGCGCCGgcccgCGucgCCa -3'
miRNA:   3'- aAGCGCCGCG-------AGC-UGUGGCa----GCua-GG- -5'
28063 5' -57.7 NC_005887.1 + 7210 0.69 0.337379
Target:  5'- cUCGCGuGCGCa-GGCGCUGUCGGcgUCg -3'
miRNA:   3'- aAGCGC-CGCGagCUGUGGCAGCU--AGg -5'
28063 5' -57.7 NC_005887.1 + 36060 0.69 0.345585
Target:  5'- cUCGaC-GCGCUCGcgcACGCCGUCGAUg- -3'
miRNA:   3'- aAGC-GcCGCGAGC---UGUGGCAGCUAgg -5'
28063 5' -57.7 NC_005887.1 + 33714 0.69 0.345585
Target:  5'- -gCGCGGCGgUCGAU-CUGcUCGAUCg -3'
miRNA:   3'- aaGCGCCGCgAGCUGuGGC-AGCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.