miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 41518 0.7 0.313617
Target:  5'- gUCGaCGGUGCUCGGCAa----GAUCCg -3'
miRNA:   3'- aAGC-GCCGCGAGCUGUggcagCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 4624 0.71 0.256528
Target:  5'- -cCGCGGCGC-CGGuggcCGCCGgcgCGAUCa -3'
miRNA:   3'- aaGCGCCGCGaGCU----GUGGCa--GCUAGg -5'
28063 5' -57.7 NC_005887.1 + 25668 0.71 0.263171
Target:  5'- -cCGCaGCGCgUCGcCAUCGUCGGUCa -3'
miRNA:   3'- aaGCGcCGCG-AGCuGUGGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 34727 0.71 0.274785
Target:  5'- -gCGCGGCGauguacauguugccUUCGAaGCCGUCGAagUCCu -3'
miRNA:   3'- aaGCGCCGC--------------GAGCUgUGGCAGCU--AGG- -5'
28063 5' -57.7 NC_005887.1 + 18413 0.71 0.276876
Target:  5'- -cCGCGGCGCUCGucgucagcacgACGCUGaucggcgCGAUCUc -3'
miRNA:   3'- aaGCGCCGCGAGC-----------UGUGGCa------GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 36168 0.7 0.291145
Target:  5'- gUCGCGGCGCgu--CACCGUgcCGA-CCg -3'
miRNA:   3'- aAGCGCCGCGagcuGUGGCA--GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 29402 0.7 0.298493
Target:  5'- -gCGCGGUcgcgaucagGCUCGACAgcUCGUCGG-CCg -3'
miRNA:   3'- aaGCGCCG---------CGAGCUGU--GGCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 37446 0.7 0.298493
Target:  5'- -gCGCGGCGCUUGcCugCG-CGGUUUg -3'
miRNA:   3'- aaGCGCCGCGAGCuGugGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 3945 0.7 0.313617
Target:  5'- -cCGCGGCGCgcaGAaGCuCGUCGAcCCg -3'
miRNA:   3'- aaGCGCCGCGag-CUgUG-GCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 40528 0.72 0.243653
Target:  5'- -aCGCGGCGCgCGGCAgCGacgaCGGUCUg -3'
miRNA:   3'- aaGCGCCGCGaGCUGUgGCa---GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 7130 0.73 0.202782
Target:  5'- --gGCGGCGCUgCGGCGCCGUUcaacuucUCCg -3'
miRNA:   3'- aagCGCCGCGA-GCUGUGGCAGcu-----AGG- -5'
28063 5' -57.7 NC_005887.1 + 35648 0.73 0.197455
Target:  5'- --aGCGGUgcgaGCUCGACGCUGUCGAc-- -3'
miRNA:   3'- aagCGCCG----CGAGCUGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 36314 0.87 0.020623
Target:  5'- -gCGCGGCGgUCGACGCCGcgcacUCGAUCCa -3'
miRNA:   3'- aaGCGCCGCgAGCUGUGGC-----AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 32742 0.79 0.074509
Target:  5'- -gCGCGGCGCUCGcgugcGCGCCGgcgCGcgCCa -3'
miRNA:   3'- aaGCGCCGCGAGC-----UGUGGCa--GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 2449 0.78 0.091001
Target:  5'- cUCGCuGCGCUaCGGCGCCGUCGAc-- -3'
miRNA:   3'- aAGCGcCGCGA-GCUGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 39778 0.77 0.096318
Target:  5'- gUCGCGGCGCUCG-CGCCGaUCGuUgCg -3'
miRNA:   3'- aAGCGCCGCGAGCuGUGGC-AGCuAgG- -5'
28063 5' -57.7 NC_005887.1 + 27356 0.75 0.150605
Target:  5'- --aGCGGCGCgcagacgagcgUCGGCAUCGucUCGAUCCc -3'
miRNA:   3'- aagCGCCGCG-----------AGCUGUGGC--AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 11778 0.74 0.163486
Target:  5'- cUCgGCGGCguccucgcuGCUCGGCGgCGUCGGUUCg -3'
miRNA:   3'- aAG-CGCCG---------CGAGCUGUgGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 33943 0.74 0.172616
Target:  5'- -cCGaCGGCGCUCGGCGagcaCGUCGcgugcggcGUCCg -3'
miRNA:   3'- aaGC-GCCGCGAGCUGUg---GCAGC--------UAGG- -5'
28063 5' -57.7 NC_005887.1 + 33408 0.74 0.172616
Target:  5'- aUCGCGGUGCguaGAUACCG-CGA-CCg -3'
miRNA:   3'- aAGCGCCGCGag-CUGUGGCaGCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.