miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 1588 0.66 0.547659
Target:  5'- cUCgGCGGCGCgCGGCGCgccaaCGgCGAUCg -3'
miRNA:   3'- aAG-CGCCGCGaGCUGUG-----GCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 14070 0.67 0.44495
Target:  5'- -cUGCGcGCGCUCGGCguGCCGaUGAUgCu -3'
miRNA:   3'- aaGCGC-CGCGAGCUG--UGGCaGCUAgG- -5'
28063 5' -57.7 NC_005887.1 + 27403 0.68 0.425698
Target:  5'- gUUGCGGCGCgUCGuacggcagcGCGCggcgugCGUCGAUCg -3'
miRNA:   3'- aAGCGCCGCG-AGC---------UGUG------GCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 12399 1.08 0.000516
Target:  5'- gUUCGCGGCGCUCGACACCGUCGAUCCc -3'
miRNA:   3'- -AAGCGCCGCGAGCUGUGGCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 25074 0.66 0.52639
Target:  5'- -gCGCGGCGCcgccCGACGucucgcCCGgcaCGAUCUu -3'
miRNA:   3'- aaGCGCCGCGa---GCUGU------GGCa--GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 6040 0.66 0.52639
Target:  5'- -gCGCGGCG-UCGAcCGCCGcgcaGAUCg -3'
miRNA:   3'- aaGCGCCGCgAGCU-GUGGCag--CUAGg -5'
28063 5' -57.7 NC_005887.1 + 23956 0.66 0.515872
Target:  5'- -cCGCGGCGUaggccaucggguUCGcgaGCGCCGgCGcgCCg -3'
miRNA:   3'- aaGCGCCGCG------------AGC---UGUGGCaGCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 38640 0.66 0.505439
Target:  5'- aUCGCGGUcggcgcgcgGCUCGACGgCGUgguagaaGAUCg -3'
miRNA:   3'- aAGCGCCG---------CGAGCUGUgGCAg------CUAGg -5'
28063 5' -57.7 NC_005887.1 + 10050 0.67 0.484855
Target:  5'- -cUGCGGCGCgcCGGCuggcCCGaCGAUCg -3'
miRNA:   3'- aaGCGCCGCGa-GCUGu---GGCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 29135 0.67 0.44495
Target:  5'- cUCGUcuGGCGUcagcagCGACACaCGUCGG-CCg -3'
miRNA:   3'- aAGCG--CCGCGa-----GCUGUG-GCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 1498 0.67 0.484855
Target:  5'- -gCGCGGCgGCUU--CGCCGgUgGAUCCg -3'
miRNA:   3'- aaGCGCCG-CGAGcuGUGGC-AgCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 16186 0.67 0.484855
Target:  5'- aUCGCGcGCGacacgaUCGACGaggacgUCGUCGAgcgCCg -3'
miRNA:   3'- aAGCGC-CGCg-----AGCUGU------GGCAGCUa--GG- -5'
28063 5' -57.7 NC_005887.1 + 1445 0.66 0.547659
Target:  5'- -gCGCGGUagcccuucggcgGCUCGucguCACCGUCGcguuUCUu -3'
miRNA:   3'- aaGCGCCG------------CGAGCu---GUGGCAGCu---AGG- -5'
28063 5' -57.7 NC_005887.1 + 21227 0.67 0.464679
Target:  5'- aUUCGUGGCGUuggCGAgCACCGUguuugcggcgacCGcgCCg -3'
miRNA:   3'- -AAGCGCCGCGa--GCU-GUGGCA------------GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 26238 0.66 0.536988
Target:  5'- -gCGCGGCGCagCGcCACCGgaaagCGuUUCa -3'
miRNA:   3'- aaGCGCCGCGa-GCuGUGGCa----GCuAGG- -5'
28063 5' -57.7 NC_005887.1 + 41709 0.66 0.502327
Target:  5'- -gCGCGuGCGCUCGcCGCgCGcuuucaucgcggcuUCGAUCUu -3'
miRNA:   3'- aaGCGC-CGCGAGCuGUG-GC--------------AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 8404 0.67 0.454757
Target:  5'- -aCGCGacGUGCUCGccgaGCGCCGUCGGc-- -3'
miRNA:   3'- aaGCGC--CGCGAGC----UGUGGCAGCUagg -5'
28063 5' -57.7 NC_005887.1 + 17229 0.67 0.435263
Target:  5'- -cUGCGGCGCUgGAUcucggccggacaACCGgucgCGAaaUCCg -3'
miRNA:   3'- aaGCGCCGCGAgCUG------------UGGCa---GCU--AGG- -5'
28063 5' -57.7 NC_005887.1 + 31907 0.66 0.52639
Target:  5'- -aCGCgaugGGUGCaCuGCGCCGUCGGUCa -3'
miRNA:   3'- aaGCG----CCGCGaGcUGUGGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 27743 0.66 0.515872
Target:  5'- cUCGaCGGCGC-CGACgGCCGUaCGcGUaCCg -3'
miRNA:   3'- aAGC-GCCGCGaGCUG-UGGCA-GC-UA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.