miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 41958 0.72 0.225354
Target:  5'- cUUCGCGGCGCUUG-C-CCGUCuuUUCg -3'
miRNA:   3'- -AAGCGCCGCGAGCuGuGGCAGcuAGG- -5'
28063 5' -57.7 NC_005887.1 + 41818 0.68 0.416261
Target:  5'- -gCGCGGCGCgCGGCgGCCGacgcguucagaUCGA-CCa -3'
miRNA:   3'- aaGCGCCGCGaGCUG-UGGC-----------AGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 41709 0.66 0.502327
Target:  5'- -gCGCGuGCGCUCGcCGCgCGcuuucaucgcggcuUCGAUCUu -3'
miRNA:   3'- aaGCGC-CGCGAGCuGUG-GC--------------AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 41518 0.7 0.313617
Target:  5'- gUCGaCGGUGCUCGGCAa----GAUCCg -3'
miRNA:   3'- aAGC-GCCGCGAGCUGUggcagCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 41290 0.67 0.484855
Target:  5'- -aCGCGGUcCuUCGACugCGUCuuGAUCUc -3'
miRNA:   3'- aaGCGCCGcG-AGCUGugGCAG--CUAGG- -5'
28063 5' -57.7 NC_005887.1 + 40870 0.71 0.269954
Target:  5'- -gCGCGaGCGC-CGcACGCCGUCGGcgucgggcUCCu -3'
miRNA:   3'- aaGCGC-CGCGaGC-UGUGGCAGCU--------AGG- -5'
28063 5' -57.7 NC_005887.1 + 40758 0.66 0.515872
Target:  5'- aUCGCcguuGGCGCgccgCG-CGCCGcCGAgCCg -3'
miRNA:   3'- aAGCG----CCGCGa---GCuGUGGCaGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 40528 0.72 0.243653
Target:  5'- -aCGCGGCGCgCGGCAgCGacgaCGGUCUg -3'
miRNA:   3'- aaGCGCCGCGaGCUGUgGCa---GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 40014 0.67 0.474713
Target:  5'- gUCGCGGUGCgcaucaUGGCGCgGcUCGAggcggCCg -3'
miRNA:   3'- aAGCGCCGCGa-----GCUGUGgC-AGCUa----GG- -5'
28063 5' -57.7 NC_005887.1 + 39778 0.77 0.096318
Target:  5'- gUCGCGGCGCUCG-CGCCGaUCGuUgCg -3'
miRNA:   3'- aAGCGCCGCGAGCuGUGGC-AGCuAgG- -5'
28063 5' -57.7 NC_005887.1 + 39454 0.72 0.219519
Target:  5'- gUUCGCGGCgGC-CGACGuguCCGUCGucgCCu -3'
miRNA:   3'- -AAGCGCCG-CGaGCUGU---GGCAGCua-GG- -5'
28063 5' -57.7 NC_005887.1 + 39410 0.67 0.44495
Target:  5'- gUCGCGaccGCGUUCGGCAUCucgCGAaucUCCa -3'
miRNA:   3'- aAGCGC---CGCGAGCUGUGGca-GCU---AGG- -5'
28063 5' -57.7 NC_005887.1 + 39107 0.68 0.406952
Target:  5'- -gCGCaGCGCgagCGGCGCgGUCGAaUCg -3'
miRNA:   3'- aaGCGcCGCGa--GCUGUGgCAGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 38640 0.66 0.505439
Target:  5'- aUCGCGGUcggcgcgcgGCUCGACGgCGUgguagaaGAUCg -3'
miRNA:   3'- aAGCGCCG---------CGAGCUGUgGCAg------CUAGg -5'
28063 5' -57.7 NC_005887.1 + 37446 0.7 0.298493
Target:  5'- -gCGCGGCGCUUGcCugCG-CGGUUUg -3'
miRNA:   3'- aaGCGCCGCGAGCuGugGCaGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 36314 0.87 0.020623
Target:  5'- -gCGCGGCGgUCGACGCCGcgcacUCGAUCCa -3'
miRNA:   3'- aaGCGCCGCgAGCUGUGGC-----AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 36168 0.7 0.291145
Target:  5'- gUCGCGGCGCgu--CACCGUgcCGA-CCg -3'
miRNA:   3'- aAGCGCCGCGagcuGUGGCA--GCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 36060 0.69 0.345585
Target:  5'- cUCGaC-GCGCUCGcgcACGCCGUCGAUg- -3'
miRNA:   3'- aAGC-GcCGCGAGC---UGUGGCAGCUAgg -5'
28063 5' -57.7 NC_005887.1 + 35721 0.66 0.536988
Target:  5'- -aCGCGuGCaGCUCGGuCGCgGUCGuggCCc -3'
miRNA:   3'- aaGCGC-CG-CGAGCU-GUGgCAGCua-GG- -5'
28063 5' -57.7 NC_005887.1 + 35648 0.73 0.197455
Target:  5'- --aGCGGUgcgaGCUCGACGCUGUCGAc-- -3'
miRNA:   3'- aagCGCCG----CGAGCUGUGGCAGCUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.