Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28065 | 3' | -64.4 | NC_005887.1 | + | 29026 | 0.67 | 0.187599 |
Target: 5'- cGAGauCCGCGAUGCGGCc-GGCguugccgaacgccUGGCCg -3' miRNA: 3'- -UUCc-GGCGCUGCGCCGcaCCG-------------ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 27370 | 0.66 | 0.230992 |
Target: 5'- -cGGCCuGCGcggccuGCGCGGCGUaGGCgucgaguugcGGCg -3' miRNA: 3'- uuCCGG-CGC------UGCGCCGCA-CCGa---------CCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 26654 | 0.72 | 0.074717 |
Target: 5'- -cGGCgGCGgaaucauccggccGCGCGGCgGUGaGCUGGUCg -3' miRNA: 3'- uuCCGgCGC-------------UGCGCCG-CAC-CGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 26393 | 0.69 | 0.126265 |
Target: 5'- ---aCUGCGACaGCGGCGUgcGGCgcgUGGCCg -3' miRNA: 3'- uuccGGCGCUG-CGCCGCA--CCG---ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 26330 | 0.73 | 0.063368 |
Target: 5'- cAGGCCGUGGC-CGGC---GCUGGCCg -3' miRNA: 3'- uUCCGGCGCUGcGCCGcacCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 25496 | 0.66 | 0.225208 |
Target: 5'- -cGGCgGCucggacgauGGCGCGGCGggUGGC-GGCa -3' miRNA: 3'- uuCCGgCG---------CUGCGCCGC--ACCGaCCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 23515 | 0.74 | 0.052054 |
Target: 5'- -cGGCCGCGcugacgaacGCGCGG-GUGaGCUGGCa -3' miRNA: 3'- uuCCGGCGC---------UGCGCCgCAC-CGACCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 23236 | 0.66 | 0.214008 |
Target: 5'- -cGGCaCGCGA-GCGGCGgcGGUcGGCg -3' miRNA: 3'- uuCCG-GCGCUgCGCCGCa-CCGaCCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 21265 | 0.71 | 0.096117 |
Target: 5'- gGGGGCacCGCGGCgGCGGCGUaugcgcuGCUGGCg -3' miRNA: 3'- -UUCCG--GCGCUG-CGCCGCAc------CGACCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 21028 | 0.66 | 0.218988 |
Target: 5'- -cGGCCGaugcgguCGGCGCGGUG-GGC-GuGCCc -3' miRNA: 3'- uuCCGGC-------GCUGCGCCGCaCCGaC-CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 19046 | 0.71 | 0.093508 |
Target: 5'- uGGGCCGCagUGCGGCGUuguucuucGGCgcgGGCUg -3' miRNA: 3'- uUCCGGCGcuGCGCCGCA--------CCGa--CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17893 | 0.66 | 0.230992 |
Target: 5'- --cGCCGCGACgaugaaguucgGCGGCGUcacaGGUUGGaCg -3' miRNA: 3'- uucCGGCGCUG-----------CGCCGCA----CCGACCgG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17299 | 0.7 | 0.113276 |
Target: 5'- -cGGCCaGCGGCacuGCGGCauggGUucugcgcuaccGGCUGGCCg -3' miRNA: 3'- uuCCGG-CGCUG---CGCCG----CA-----------CCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17193 | 0.68 | 0.173895 |
Target: 5'- -cGGCCGC-ACGCGGCaauGUUGcGCCg -3' miRNA: 3'- uuCCGGCGcUGCGCCGcacCGAC-CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 16859 | 0.66 | 0.236901 |
Target: 5'- cGAGGuguaCCGCGGCGCGGac-GGCUcgacaGGCa -3' miRNA: 3'- -UUCC----GGCGCUGCGCCgcaCCGA-----CCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 16462 | 0.67 | 0.19254 |
Target: 5'- cGGGCaugcgcucgaccgCGCGGCaggaucCGGCG-GGCUGGUCg -3' miRNA: 3'- uUCCG-------------GCGCUGc-----GCCGCaCCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 14823 | 0.72 | 0.086076 |
Target: 5'- -cGGCCGCGACGCugauGGCG-GGCacguucgcgGGCg -3' miRNA: 3'- uuCCGGCGCUGCG----CCGCaCCGa--------CCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 14695 | 0.72 | 0.072867 |
Target: 5'- cGGGCU-CGuCGCGGCG-GGCgGGCCg -3' miRNA: 3'- uUCCGGcGCuGCGCCGCaCCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13953 | 0.69 | 0.140622 |
Target: 5'- -cGGCUGCGACGUGcGCGUGaCgacaGCCg -3' miRNA: 3'- uuCCGGCGCUGCGC-CGCACcGac--CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13593 | 0.7 | 0.124233 |
Target: 5'- gGAGGCCGCGuacuucaucgcugcuGgcagCGCGGCGcgcGGC-GGCCg -3' miRNA: 3'- -UUCCGGCGC---------------U----GCGCCGCa--CCGaCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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