miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28065 3' -64.4 NC_005887.1 + 41795 0.66 0.210743
Target:  5'- -cGGCgGUcuucgcgcuguauccGGCGCGGCGcgcGGC-GGCCg -3'
miRNA:   3'- uuCCGgCG---------------CUGCGCCGCa--CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 41592 0.69 0.136899
Target:  5'- -cGGCCaGCGGCggcccagguGCGGCGgccGGCgcGGCCc -3'
miRNA:   3'- uuCCGG-CGCUG---------CGCCGCa--CCGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 41528 0.66 0.219547
Target:  5'- -cGGCCGCGaucGCGCGaGCaUGGCUGu-- -3'
miRNA:   3'- uuCCGGCGC---UGCGC-CGcACCGACcgg -5'
28065 3' -64.4 NC_005887.1 + 41442 0.7 0.116401
Target:  5'- cGGGUCGCGACGCGGauCGaaGCcgaGGCCg -3'
miRNA:   3'- uUCCGGCGCUGCGCC--GCacCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 40860 0.66 0.230992
Target:  5'- -cGGCCGCGccGCGCGaGCGccGCacGCCg -3'
miRNA:   3'- uuCCGGCGC--UGCGC-CGCacCGacCGG- -5'
28065 3' -64.4 NC_005887.1 + 40670 0.72 0.083033
Target:  5'- -cGGCCGCaccauccugcaccuGGCGCGcGCGcacGGCUGGCa -3'
miRNA:   3'- uuCCGGCG--------------CUGCGC-CGCa--CCGACCGg -5'
28065 3' -64.4 NC_005887.1 + 39461 0.7 0.116401
Target:  5'- aAGGGCCGCGugccugaaaaGC-GCGUGuugccGCUGGCCa -3'
miRNA:   3'- -UUCCGGCGCug--------CGcCGCAC-----CGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 39417 0.66 0.21621
Target:  5'- cGGuGCCGCGGCGCuugcgcagcuuGGCGgcggcgucguucgcGGC-GGCCg -3'
miRNA:   3'- uUC-CGGCGCUGCG-----------CCGCa-------------CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 38162 0.68 0.152356
Target:  5'- cAGGCCgagcGCGAaauagGCGGUGUGcaGCaUGGCCg -3'
miRNA:   3'- uUCCGG----CGCUg----CGCCGCAC--CG-ACCGG- -5'
28065 3' -64.4 NC_005887.1 + 35330 0.67 0.183247
Target:  5'- --uGCCGCGcgcCGCGGC--GGCcGGCCa -3'
miRNA:   3'- uucCGGCGCu--GCGCCGcaCCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 34342 0.66 0.236901
Target:  5'- --uGCCGUGGCGcCGGCcacGGCUGGagaCg -3'
miRNA:   3'- uucCGGCGCUGC-GCCGca-CCGACCg--G- -5'
28065 3' -64.4 NC_005887.1 + 33635 0.71 0.099887
Target:  5'- -uGGCCGCGAcgaagcgcuuaccgcCGCGGCGgaucGCcgGGCCc -3'
miRNA:   3'- uuCCGGCGCU---------------GCGCCGCac--CGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 32502 0.74 0.058254
Target:  5'- --uGCgGCG-CGCGGCGUucaGGUUGGCCg -3'
miRNA:   3'- uucCGgCGCuGCGCCGCA---CCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 32426 0.66 0.214008
Target:  5'- -cGGCgGCGAUGUGGCc-GGC-GGCg -3'
miRNA:   3'- uuCCGgCGCUGCGCCGcaCCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 32339 0.67 0.198108
Target:  5'- -cGGCCGCG-CGUGaUGUGGUcGGCg -3'
miRNA:   3'- uuCCGGCGCuGCGCcGCACCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 30996 0.68 0.152356
Target:  5'- cGGGgUGCGucucucGCGUGGCGcGGCgcaGGCCa -3'
miRNA:   3'- uUCCgGCGC------UGCGCCGCaCCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 30473 0.68 0.160665
Target:  5'- cAGGCggugCGCGACGCGGCccGUGcGUUGcGCa -3'
miRNA:   3'- uUCCG----GCGCUGCGCCG--CAC-CGAC-CGg -5'
28065 3' -64.4 NC_005887.1 + 30434 0.66 0.20859
Target:  5'- cAGGCCGaCGuCGgGGCGgGGCaUGuuGCCg -3'
miRNA:   3'- uUCCGGC-GCuGCgCCGCaCCG-AC--CGG- -5'
28065 3' -64.4 NC_005887.1 + 30330 0.67 0.193041
Target:  5'- -cGGuuGCGA-GCGGCGUGcGUgcGCCg -3'
miRNA:   3'- uuCCggCGCUgCGCCGCAC-CGacCGG- -5'
28065 3' -64.4 NC_005887.1 + 29299 0.75 0.04783
Target:  5'- -cGGCCuuGuACGCGGCGacGCUGGCCg -3'
miRNA:   3'- uuCCGGcgC-UGCGCCGCacCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.