Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28065 | 3' | -64.4 | NC_005887.1 | + | 32426 | 0.66 | 0.214008 |
Target: 5'- -cGGCgGCGAUGUGGCc-GGC-GGCg -3' miRNA: 3'- uuCCGgCGCUGCGCCGcaCCGaCCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 38162 | 0.68 | 0.152356 |
Target: 5'- cAGGCCgagcGCGAaauagGCGGUGUGcaGCaUGGCCg -3' miRNA: 3'- uUCCGG----CGCUg----CGCCGCAC--CG-ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 30473 | 0.68 | 0.160665 |
Target: 5'- cAGGCggugCGCGACGCGGCccGUGcGUUGcGCa -3' miRNA: 3'- uUCCG----GCGCUGCGCCG--CAC-CGAC-CGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13392 | 0.68 | 0.169381 |
Target: 5'- gAAGGCCG--GCGCGGCGgacgucGGC-GGCa -3' miRNA: 3'- -UUCCGGCgcUGCGCCGCa-----CCGaCCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17193 | 0.68 | 0.173895 |
Target: 5'- -cGGCCGC-ACGCGGCaauGUUGcGCCg -3' miRNA: 3'- uuCCGGCGcUGCGCCGcacCGAC-CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 35330 | 0.67 | 0.183247 |
Target: 5'- --uGCCGCGcgcCGCGGC--GGCcGGCCa -3' miRNA: 3'- uucCGGCGCu--GCGCCGcaCCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 1487 | 0.67 | 0.188088 |
Target: 5'- -cGGCgUGCGGCGCucGCGcGGCgcGGCCg -3' miRNA: 3'- uuCCG-GCGCUGCGc-CGCaCCGa-CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 16462 | 0.67 | 0.19254 |
Target: 5'- cGGGCaugcgcucgaccgCGCGGCaggaucCGGCG-GGCUGGUCg -3' miRNA: 3'- uUCCG-------------GCGCUGc-----GCCGCaCCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 30434 | 0.66 | 0.20859 |
Target: 5'- cAGGCCGaCGuCGgGGCGgGGCaUGuuGCCg -3' miRNA: 3'- uUCCGGC-GCuGCgCCGCaCCG-AC--CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 30996 | 0.68 | 0.152356 |
Target: 5'- cGGGgUGCGucucucGCGUGGCGcGGCgcaGGCCa -3' miRNA: 3'- uUCCgGCGC------UGCGCCGCaCCGa--CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 41592 | 0.69 | 0.136899 |
Target: 5'- -cGGCCaGCGGCggcccagguGCGGCGgccGGCgcGGCCc -3' miRNA: 3'- uuCCGG-CGCUG---------CGCCGCa--CCGa-CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13593 | 0.7 | 0.124233 |
Target: 5'- gGAGGCCGCGuacuucaucgcugcuGgcagCGCGGCGcgcGGC-GGCCg -3' miRNA: 3'- -UUCCGGCGC---------------U----GCGCCGCa--CCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 26330 | 0.73 | 0.063368 |
Target: 5'- cAGGCCGUGGC-CGGC---GCUGGCCg -3' miRNA: 3'- uUCCGGCGCUGcGCCGcacCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 12600 | 0.73 | 0.067015 |
Target: 5'- -cGGCCGCGACGCucGGCGUG-CUGacgcagaaGCCc -3' miRNA: 3'- uuCCGGCGCUGCG--CCGCACcGAC--------CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 14695 | 0.72 | 0.072867 |
Target: 5'- cGGGCU-CGuCGCGGCG-GGCgGGCCg -3' miRNA: 3'- uUCCGGcGCuGCGCCGCaCCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 40670 | 0.72 | 0.083033 |
Target: 5'- -cGGCCGCaccauccugcaccuGGCGCGcGCGcacGGCUGGCa -3' miRNA: 3'- uuCCGGCG--------------CUGCGC-CGCa--CCGACCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 14823 | 0.72 | 0.086076 |
Target: 5'- -cGGCCGCGACGCugauGGCG-GGCacguucgcgGGCg -3' miRNA: 3'- uuCCGGCGCUGCG----CCGCaCCGa--------CCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 5761 | 0.71 | 0.088488 |
Target: 5'- cGAGGCCGCGAa--GGC---GCUGGCCg -3' miRNA: 3'- -UUCCGGCGCUgcgCCGcacCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 21265 | 0.71 | 0.096117 |
Target: 5'- gGGGGCacCGCGGCgGCGGCGUaugcgcuGCUGGCg -3' miRNA: 3'- -UUCCG--GCGCUG-CGCCGCAc------CGACCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 39461 | 0.7 | 0.116401 |
Target: 5'- aAGGGCCGCGugccugaaaaGC-GCGUGuugccGCUGGCCa -3' miRNA: 3'- -UUCCGGCGCug--------CGcCGCAC-----CGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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