miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28065 3' -64.4 NC_005887.1 + 12139 1.09 0.000087
Target:  5'- gAAGGCCGCGACGCGGCGUGGCUGGCCg -3'
miRNA:   3'- -UUCCGGCGCUGCGCCGCACCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 29299 0.75 0.04783
Target:  5'- -cGGCCuuGuACGCGGCGacGCUGGCCg -3'
miRNA:   3'- uuCCGGcgC-UGCGCCGCacCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 23515 0.74 0.052054
Target:  5'- -cGGCCGCGcugacgaacGCGCGG-GUGaGCUGGCa -3'
miRNA:   3'- uuCCGGCGC---------UGCGCCgCAC-CGACCGg -5'
28065 3' -64.4 NC_005887.1 + 32502 0.74 0.058254
Target:  5'- --uGCgGCG-CGCGGCGUucaGGUUGGCCg -3'
miRNA:   3'- uucCGgCGCuGCGCCGCA---CCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 26330 0.73 0.063368
Target:  5'- cAGGCCGUGGC-CGGC---GCUGGCCg -3'
miRNA:   3'- uUCCGGCGCUGcGCCGcacCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 12600 0.73 0.067015
Target:  5'- -cGGCCGCGACGCucGGCGUG-CUGacgcagaaGCCc -3'
miRNA:   3'- uuCCGGCGCUGCG--CCGCACcGAC--------CGG- -5'
28065 3' -64.4 NC_005887.1 + 14695 0.72 0.072867
Target:  5'- cGGGCU-CGuCGCGGCG-GGCgGGCCg -3'
miRNA:   3'- uUCCGGcGCuGCGCCGCaCCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 26654 0.72 0.074717
Target:  5'- -cGGCgGCGgaaucauccggccGCGCGGCgGUGaGCUGGUCg -3'
miRNA:   3'- uuCCGgCGC-------------UGCGCCG-CAC-CGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 40670 0.72 0.083033
Target:  5'- -cGGCCGCaccauccugcaccuGGCGCGcGCGcacGGCUGGCa -3'
miRNA:   3'- uuCCGGCG--------------CUGCGC-CGCa--CCGACCGg -5'
28065 3' -64.4 NC_005887.1 + 14823 0.72 0.086076
Target:  5'- -cGGCCGCGACGCugauGGCG-GGCacguucgcgGGCg -3'
miRNA:   3'- uuCCGGCGCUGCG----CCGCaCCGa--------CCGg -5'
28065 3' -64.4 NC_005887.1 + 5761 0.71 0.088488
Target:  5'- cGAGGCCGCGAa--GGC---GCUGGCCg -3'
miRNA:   3'- -UUCCGGCGCUgcgCCGcacCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 19046 0.71 0.093508
Target:  5'- uGGGCCGCagUGCGGCGUuguucuucGGCgcgGGCUg -3'
miRNA:   3'- uUCCGGCGcuGCGCCGCA--------CCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 21265 0.71 0.096117
Target:  5'- gGGGGCacCGCGGCgGCGGCGUaugcgcuGCUGGCg -3'
miRNA:   3'- -UUCCG--GCGCUG-CGCCGCAc------CGACCGg -5'
28065 3' -64.4 NC_005887.1 + 33635 0.71 0.099887
Target:  5'- -uGGCCGCGAcgaagcgcuuaccgcCGCGGCGgaucGCcgGGCCc -3'
miRNA:   3'- uuCCGGCGCU---------------GCGCCGCac--CGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 17299 0.7 0.113276
Target:  5'- -cGGCCaGCGGCacuGCGGCauggGUucugcgcuaccGGCUGGCCg -3'
miRNA:   3'- uuCCGG-CGCUG---CGCCG----CA-----------CCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 39461 0.7 0.116401
Target:  5'- aAGGGCCGCGugccugaaaaGC-GCGUGuugccGCUGGCCa -3'
miRNA:   3'- -UUCCGGCGCug--------CGcCGCAC-----CGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 41442 0.7 0.116401
Target:  5'- cGGGUCGCGACGCGGauCGaaGCcgaGGCCg -3'
miRNA:   3'- uUCCGGCGCUGCGCC--GCacCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 6989 0.7 0.116401
Target:  5'- cAGGcCCGCGugGUgccgGGCGUGaaGCUcguGGCCg -3'
miRNA:   3'- uUCC-GGCGCugCG----CCGCAC--CGA---CCGG- -5'
28065 3' -64.4 NC_005887.1 + 13593 0.7 0.124233
Target:  5'- gGAGGCCGCGuacuucaucgcugcuGgcagCGCGGCGcgcGGC-GGCCg -3'
miRNA:   3'- -UUCCGGCGC---------------U----GCGCCGCa--CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 26393 0.69 0.126265
Target:  5'- ---aCUGCGACaGCGGCGUgcGGCgcgUGGCCg -3'
miRNA:   3'- uuccGGCGCUG-CGCCGCA--CCG---ACCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.