miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28065 3' -64.4 NC_005887.1 + 14823 0.72 0.086076
Target:  5'- -cGGCCGCGACGCugauGGCG-GGCacguucgcgGGCg -3'
miRNA:   3'- uuCCGGCGCUGCG----CCGCaCCGa--------CCGg -5'
28065 3' -64.4 NC_005887.1 + 5761 0.71 0.088488
Target:  5'- cGAGGCCGCGAa--GGC---GCUGGCCg -3'
miRNA:   3'- -UUCCGGCGCUgcgCCGcacCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 21265 0.71 0.096117
Target:  5'- gGGGGCacCGCGGCgGCGGCGUaugcgcuGCUGGCg -3'
miRNA:   3'- -UUCCG--GCGCUG-CGCCGCAc------CGACCGg -5'
28065 3' -64.4 NC_005887.1 + 39461 0.7 0.116401
Target:  5'- aAGGGCCGCGugccugaaaaGC-GCGUGuugccGCUGGCCa -3'
miRNA:   3'- -UUCCGGCGCug--------CGcCGCAC-----CGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 13593 0.7 0.124233
Target:  5'- gGAGGCCGCGuacuucaucgcugcuGgcagCGCGGCGcgcGGC-GGCCg -3'
miRNA:   3'- -UUCCGGCGC---------------U----GCGCCGCa--CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 41592 0.69 0.136899
Target:  5'- -cGGCCaGCGGCggcccagguGCGGCGgccGGCgcGGCCc -3'
miRNA:   3'- uuCCGG-CGCUG---------CGCCGCa--CCGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 30996 0.68 0.152356
Target:  5'- cGGGgUGCGucucucGCGUGGCGcGGCgcaGGCCa -3'
miRNA:   3'- uUCCgGCGC------UGCGCCGCaCCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 38162 0.68 0.152356
Target:  5'- cAGGCCgagcGCGAaauagGCGGUGUGcaGCaUGGCCg -3'
miRNA:   3'- uUCCGG----CGCUg----CGCCGCAC--CG-ACCGG- -5'
28065 3' -64.4 NC_005887.1 + 39417 0.66 0.21621
Target:  5'- cGGuGCCGCGGCGCuugcgcagcuuGGCGgcggcgucguucgcGGC-GGCCg -3'
miRNA:   3'- uUC-CGGCGCUGCG-----------CCGCa-------------CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 41795 0.66 0.210743
Target:  5'- -cGGCgGUcuucgcgcuguauccGGCGCGGCGcgcGGC-GGCCg -3'
miRNA:   3'- uuCCGgCG---------------CUGCGCCGCa--CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 32339 0.67 0.198108
Target:  5'- -cGGCCGCG-CGUGaUGUGGUcGGCg -3'
miRNA:   3'- uuCCGGCGCuGCGCcGCACCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 30330 0.67 0.193041
Target:  5'- -cGGuuGCGA-GCGGCGUGcGUgcGCCg -3'
miRNA:   3'- uuCCggCGCUgCGCCGCAC-CGacCGG- -5'
28065 3' -64.4 NC_005887.1 + 29026 0.67 0.187599
Target:  5'- cGAGauCCGCGAUGCGGCc-GGCguugccgaacgccUGGCCg -3'
miRNA:   3'- -UUCc-GGCGCUGCGCCGcaCCG-------------ACCGG- -5'
28065 3' -64.4 NC_005887.1 + 21028 0.66 0.218988
Target:  5'- -cGGCCGaugcgguCGGCGCGGUG-GGC-GuGCCc -3'
miRNA:   3'- uuCCGGC-------GCUGCGCCGCaCCGaC-CGG- -5'
28065 3' -64.4 NC_005887.1 + 11811 0.66 0.219547
Target:  5'- --cGCUGCuGCGUGGCGUcucGGCcgacGGCCg -3'
miRNA:   3'- uucCGGCGcUGCGCCGCA---CCGa---CCGG- -5'
28065 3' -64.4 NC_005887.1 + 41528 0.66 0.219547
Target:  5'- -cGGCCGCGaucGCGCGaGCaUGGCUGu-- -3'
miRNA:   3'- uuCCGGCGC---UGCGC-CGcACCGACcgg -5'
28065 3' -64.4 NC_005887.1 + 27370 0.66 0.230992
Target:  5'- -cGGCCuGCGcggccuGCGCGGCGUaGGCgucgaguugcGGCg -3'
miRNA:   3'- uuCCGG-CGC------UGCGCCGCA-CCGa---------CCGg -5'
28065 3' -64.4 NC_005887.1 + 40860 0.66 0.230992
Target:  5'- -cGGCCGCGccGCGCGaGCGccGCacGCCg -3'
miRNA:   3'- uuCCGGCGC--UGCGC-CGCacCGacCGG- -5'
28065 3' -64.4 NC_005887.1 + 1833 0.66 0.230992
Target:  5'- --uGCCGCG-CGCcGCGUGGUggauGCCg -3'
miRNA:   3'- uucCGGCGCuGCGcCGCACCGac--CGG- -5'
28065 3' -64.4 NC_005887.1 + 12139 1.09 0.000087
Target:  5'- gAAGGCCGCGACGCGGCGUGGCUGGCCg -3'
miRNA:   3'- -UUCCGGCGCUGCGCCGCACCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.