miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 27737 0.69 0.245458
Target:  5'- cGCGccCUCGacggcGCCGACGGCCGUacGCGu -3'
miRNA:   3'- cCGCa-GAGC-----CGGCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13780 0.69 0.245458
Target:  5'- cGCGUCcgCGcaGCgGGCGGCgaCGCCUACa -3'
miRNA:   3'- cCGCAGa-GC--CGgCUGCCG--GCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 14013 0.69 0.239399
Target:  5'- cGCGcCUCcgcaaccGCCGGCGcGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGAGc------CGGCUGC-CGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 30526 0.69 0.233465
Target:  5'- cGCGUaggCGGCCGuCGGCCGag-ACGc -3'
miRNA:   3'- cCGCAga-GCCGGCuGCCGGCggaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13379 0.69 0.233465
Target:  5'- uGGCG-CUCGcGCUGAaGGCCGgCgcgGCGg -3'
miRNA:   3'- -CCGCaGAGC-CGGCUgCCGGCgGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 4229 0.69 0.227656
Target:  5'- aGGCGUgcugCUCGcGCCGAcgcuCGGCCGCacGCa -3'
miRNA:   3'- -CCGCA----GAGC-CGGCU----GCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 39649 0.69 0.216404
Target:  5'- cGCGgCUCGGCCGcuuGCCGCCcgUACGc -3'
miRNA:   3'- cCGCaGAGCCGGCugcCGGCGG--AUGC- -5'
28067 5' -61.7 NC_005887.1 + 10098 0.69 0.216404
Target:  5'- gGGCGgCcCGcGCCGACGGCCaGCUgauCGg -3'
miRNA:   3'- -CCGCaGaGC-CGGCUGCCGG-CGGau-GC- -5'
28067 5' -61.7 NC_005887.1 + 17807 0.7 0.210959
Target:  5'- gGGCGcC-CGGCCGaagguGCGGCCGC--GCGu -3'
miRNA:   3'- -CCGCaGaGCCGGC-----UGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 36848 0.7 0.197352
Target:  5'- cGGUG-CUgCGGCCGgugcuGCGGCCggugcugcgccaucgGCCUGCGu -3'
miRNA:   3'- -CCGCaGA-GCCGGC-----UGCCGG---------------CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 37705 0.7 0.193821
Target:  5'- cGCGUCgcugagauccuugaUCGcGCCGGCGGCCaccggcGCCgcgGCGa -3'
miRNA:   3'- cCGCAG--------------AGC-CGGCUGCCGG------CGGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 17683 0.7 0.185477
Target:  5'- uGGCGaCgUCGGCacgauguucgUGACGGCCGgCUACa -3'
miRNA:   3'- -CCGCaG-AGCCG----------GCUGCCGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 40030 0.71 0.171524
Target:  5'- uGGCG---CGGCUcgaGGCGGCCGgCCUACGc -3'
miRNA:   3'- -CCGCagaGCCGG---CUGCCGGC-GGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 26717 0.71 0.162749
Target:  5'- cGGCGcccugaUCGG-CGAgccCGGCCGCCUGCu -3'
miRNA:   3'- -CCGCag----AGCCgGCU---GCCGGCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 19479 0.71 0.154381
Target:  5'- cGCGaggaUCUgauagCGGCCGGCGGCCGUCgAUGg -3'
miRNA:   3'- cCGC----AGA-----GCCGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 23408 0.72 0.150345
Target:  5'- uGCGUUaUUGGCCgccGACGGCCG-CUGCGa -3'
miRNA:   3'- cCGCAG-AGCCGG---CUGCCGGCgGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 28311 0.72 0.142559
Target:  5'- cGGCaucGUCUCaggcugcGCCGGCGGCgCGCCgGCGg -3'
miRNA:   3'- -CCG---CAGAGc------CGGCUGCCG-GCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 8551 0.72 0.138806
Target:  5'- cGCGUggUGGCCGugGGuCCGCgCUugGu -3'
miRNA:   3'- cCGCAgaGCCGGCugCC-GGCG-GAugC- -5'
28067 5' -61.7 NC_005887.1 + 23959 0.72 0.131571
Target:  5'- cGGCGUaggccaUCGgguucgcgagcGCCGGCGcGCCGUCUACGc -3'
miRNA:   3'- -CCGCAg-----AGC-----------CGGCUGC-CGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 27083 0.73 0.124684
Target:  5'- cGGCGgacgCUC-GCCGcgcagcacuGCGGCUGCCUGCu -3'
miRNA:   3'- -CCGCa---GAGcCGGC---------UGCCGGCGGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.