miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 18386 0.67 0.313175
Target:  5'- cGGCG-CUCGcgaacCCGAUGGCCuacGCCgcgGCGc -3'
miRNA:   3'- -CCGCaGAGCc----GGCUGCCGG---CGGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 8347 0.67 0.313175
Target:  5'- cGCGUgC-CGuCUGGCGGCCgaaGCCUGCGa -3'
miRNA:   3'- cCGCA-GaGCcGGCUGCCGG---CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 27141 0.67 0.313175
Target:  5'- cGGCGaUCacgCGGCCGaACGGCCaCggGCGc -3'
miRNA:   3'- -CCGC-AGa--GCCGGC-UGCCGGcGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 18916 0.67 0.305809
Target:  5'- cGGCGggaUGGCgGGCGGCUGCg-ACGa -3'
miRNA:   3'- -CCGCagaGCCGgCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13182 0.67 0.305808
Target:  5'- aGCGggagCGGUCGAgcaGGCCGCCggccgACGu -3'
miRNA:   3'- cCGCaga-GCCGGCUg--CCGGCGGa----UGC- -5'
28067 5' -61.7 NC_005887.1 + 25496 0.67 0.305808
Target:  5'- cGGCGgCUCGGaCGAUGGCgCGgCgggugGCGg -3'
miRNA:   3'- -CCGCaGAGCCgGCUGCCG-GCgGa----UGC- -5'
28067 5' -61.7 NC_005887.1 + 33931 0.67 0.301453
Target:  5'- cGCGUCgacCuGCCGACGGCgcucggcgagcacguCGCgUGCGg -3'
miRNA:   3'- cCGCAGa--GcCGGCUGCCG---------------GCGgAUGC- -5'
28067 5' -61.7 NC_005887.1 + 20252 0.67 0.298576
Target:  5'- cGGCagcaGUUUCcacagaagGGCCccGACGGCCGCCgUGCu -3'
miRNA:   3'- -CCG----CAGAG--------CCGG--CUGCCGGCGG-AUGc -5'
28067 5' -61.7 NC_005887.1 + 29044 0.67 0.298576
Target:  5'- cGGCGUUgccgaacgccUGGCCGAucUGGUucagCGCCUGCGc -3'
miRNA:   3'- -CCGCAGa---------GCCGGCU--GCCG----GCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 35143 0.67 0.298576
Target:  5'- cGGCGcCaCGGaCgGGCGGCCGUC-ACGc -3'
miRNA:   3'- -CCGCaGaGCC-GgCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 31429 0.67 0.298576
Target:  5'- gGGCGUgagcaggcCGGCCGACGucaucugcGCCGgCUGCa -3'
miRNA:   3'- -CCGCAga------GCCGGCUGC--------CGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 11802 0.67 0.29218
Target:  5'- cGGCGUCgguucguacgcuaaGGCaGGCGGCgGCCUGu- -3'
miRNA:   3'- -CCGCAGag------------CCGgCUGCCGgCGGAUgc -5'
28067 5' -61.7 NC_005887.1 + 20844 0.68 0.284509
Target:  5'- cGGCGUCgUUGcGCCGAUuGCCGgCgGCGa -3'
miRNA:   3'- -CCGCAG-AGC-CGGCUGcCGGCgGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 12558 0.68 0.282445
Target:  5'- uGGCGUCgaCGGCCGcCGGCaugcgcauggugucCGCCgaccCGg -3'
miRNA:   3'- -CCGCAGa-GCCGGCuGCCG--------------GCGGau--GC- -5'
28067 5' -61.7 NC_005887.1 + 17232 0.68 0.277675
Target:  5'- cGGCGcuggaUCUCGGCCGGacaacCGGUCGCgaaauccgACGg -3'
miRNA:   3'- -CCGC-----AGAGCCGGCU-----GCCGGCGga------UGC- -5'
28067 5' -61.7 NC_005887.1 + 29779 0.68 0.277675
Target:  5'- cGGCGgacaccaugCGcauGCCGGCGGCCGUCgACGc -3'
miRNA:   3'- -CCGCaga------GC---CGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 7274 0.68 0.270972
Target:  5'- cGCGacaUCGGCCc-CGGCCGCCcGCu -3'
miRNA:   3'- cCGCag-AGCCGGcuGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 9277 0.68 0.270972
Target:  5'- cGGCGg-UCGGCaCGGCGacGCCGCagguUACGg -3'
miRNA:   3'- -CCGCagAGCCG-GCUGC--CGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 27824 0.68 0.270972
Target:  5'- cGCG-C-C-GCCGACGGCCgcGCCUGCa -3'
miRNA:   3'- cCGCaGaGcCGGCUGCCGG--CGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 13313 0.68 0.257957
Target:  5'- aGGCG-UUCGGCaaCGcCGGCCGCaucGCGg -3'
miRNA:   3'- -CCGCaGAGCCG--GCuGCCGGCGga-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.