miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 16504 0.66 0.360175
Target:  5'- cGGCGaugUCgcaGGCCGAuCGcGUCGCCgccgGCGc -3'
miRNA:   3'- -CCGC---AGag-CCGGCU-GC-CGGCGGa---UGC- -5'
28067 5' -61.7 NC_005887.1 + 17232 0.68 0.277675
Target:  5'- cGGCGcuggaUCUCGGCCGGacaacCGGUCGCgaaauccgACGg -3'
miRNA:   3'- -CCGC-----AGAGCCGGCU-----GCCGGCGga------UGC- -5'
28067 5' -61.7 NC_005887.1 + 17326 0.76 0.06822
Target:  5'- uGCG-CUaccggcUGGCCGGCGGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGA------GCCGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 17683 0.7 0.185477
Target:  5'- uGGCGaCgUCGGCacgauguucgUGACGGCCGgCUACa -3'
miRNA:   3'- -CCGCaG-AGCCG----------GCUGCCGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 17807 0.7 0.210959
Target:  5'- gGGCGcC-CGGCCGaagguGCGGCCGC--GCGu -3'
miRNA:   3'- -CCGCaGaGCCGGC-----UGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 17914 0.66 0.35201
Target:  5'- cGGCGUCacaGGuuGgACGGaCGCgCUACGc -3'
miRNA:   3'- -CCGCAGag-CCggC-UGCCgGCG-GAUGC- -5'
28067 5' -61.7 NC_005887.1 + 18386 0.67 0.313175
Target:  5'- cGGCG-CUCGcgaacCCGAUGGCCuacGCCgcgGCGc -3'
miRNA:   3'- -CCGCaGAGCc----GGCUGCCGG---CGGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 18539 0.74 0.103135
Target:  5'- gGGCGuUCUCGGUgGGCGGCggCGCCggcuucGCGg -3'
miRNA:   3'- -CCGC-AGAGCCGgCUGCCG--GCGGa-----UGC- -5'
28067 5' -61.7 NC_005887.1 + 18916 0.67 0.305809
Target:  5'- cGGCGggaUGGCgGGCGGCUGCg-ACGa -3'
miRNA:   3'- -CCGCagaGCCGgCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 19479 0.71 0.154381
Target:  5'- cGCGaggaUCUgauagCGGCCGGCGGCCGUCgAUGg -3'
miRNA:   3'- cCGC----AGA-----GCCGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 20252 0.67 0.298576
Target:  5'- cGGCagcaGUUUCcacagaagGGCCccGACGGCCGCCgUGCu -3'
miRNA:   3'- -CCG----CAGAG--------CCGG--CUGCCGGCGG-AUGc -5'
28067 5' -61.7 NC_005887.1 + 20844 0.68 0.284509
Target:  5'- cGGCGUCgUUGcGCCGAUuGCCGgCgGCGa -3'
miRNA:   3'- -CCGCAG-AGC-CGGCUGcCGGCgGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 22198 0.67 0.320675
Target:  5'- -cUGUC-CGGCgCGGCGGUCGCauauUACGg -3'
miRNA:   3'- ccGCAGaGCCG-GCUGCCGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 22846 0.74 0.097653
Target:  5'- cGGCaGaUCUCGGUaccauCGACGGCCGCCgGCc -3'
miRNA:   3'- -CCG-C-AGAGCCG-----GCUGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 23408 0.72 0.150345
Target:  5'- uGCGUUaUUGGCCgccGACGGCCG-CUGCGa -3'
miRNA:   3'- cCGCAG-AGCCGG---CUGCCGGCgGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 23959 0.72 0.131571
Target:  5'- cGGCGUaggccaUCGgguucgcgagcGCCGGCGcGCCGUCUACGc -3'
miRNA:   3'- -CCGCAg-----AGC-----------CGGCUGC-CGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 24879 0.66 0.376898
Target:  5'- aGGCGg--CGGCCGAUG-CCGCgCgcuCGg -3'
miRNA:   3'- -CCGCagaGCCGGCUGCcGGCG-Gau-GC- -5'
28067 5' -61.7 NC_005887.1 + 25006 0.8 0.036796
Target:  5'- aGCGUCagcUCGcGCCGGCGGCCGCCgGCc -3'
miRNA:   3'- cCGCAG---AGC-CGGCUGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 25062 0.67 0.320675
Target:  5'- cGGCGUUUgCGcGCgCGGC-GCCGCCcgACGu -3'
miRNA:   3'- -CCGCAGA-GC-CG-GCUGcCGGCGGa-UGC- -5'
28067 5' -61.7 NC_005887.1 + 25496 0.67 0.305808
Target:  5'- cGGCGgCUCGGaCGAUGGCgCGgCgggugGCGg -3'
miRNA:   3'- -CCGCaGAGCCgGCUGCCG-GCgGa----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.