miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 1494 0.67 0.328309
Target:  5'- cGGCG-CUCGcGCgGcGCGGCCGU--GCGg -3'
miRNA:   3'- -CCGCaGAGC-CGgC-UGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 4229 0.69 0.227656
Target:  5'- aGGCGUgcugCUCGcGCCGAcgcuCGGCCGCacGCa -3'
miRNA:   3'- -CCGCA----GAGC-CGGCU----GCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 6240 0.66 0.368471
Target:  5'- cGGaCG-UUCGaaGUCGACgaggaaauGGCCGCCUACGu -3'
miRNA:   3'- -CC-GCaGAGC--CGGCUG--------CCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 7006 0.67 0.320675
Target:  5'- gGGCGUgaagCUCguGGCCGGCcGCCGCg-GCGc -3'
miRNA:   3'- -CCGCA----GAG--CCGGCUGcCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 7274 0.68 0.270972
Target:  5'- cGCGacaUCGGCCc-CGGCCGCCcGCu -3'
miRNA:   3'- cCGCag-AGCCGGcuGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 8347 0.67 0.313175
Target:  5'- cGCGUgC-CGuCUGGCGGCCgaaGCCUGCGa -3'
miRNA:   3'- cCGCA-GaGCcGGCUGCCGG---CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 8551 0.72 0.138806
Target:  5'- cGCGUggUGGCCGugGGuCCGCgCUugGu -3'
miRNA:   3'- cCGCAgaGCCGGCugCC-GGCG-GAugC- -5'
28067 5' -61.7 NC_005887.1 + 9277 0.68 0.270972
Target:  5'- cGGCGg-UCGGCaCGGCGacGCCGCagguUACGg -3'
miRNA:   3'- -CCGCagAGCCG-GCUGC--CGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 10098 0.69 0.216404
Target:  5'- gGGCGgCcCGcGCCGACGGCCaGCUgauCGg -3'
miRNA:   3'- -CCGCaGaGC-CGGCUGCCGG-CGGau-GC- -5'
28067 5' -61.7 NC_005887.1 + 11221 0.66 0.350392
Target:  5'- aGGCGUgCgccggaaauauaCGGUCGAUGGCCGCg-ACa -3'
miRNA:   3'- -CCGCA-Ga-----------GCCGGCUGCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 11397 0.67 0.320675
Target:  5'- aGCG-CUggCGGCCGGC-GCCGCCaagGCa -3'
miRNA:   3'- cCGCaGA--GCCGGCUGcCGGCGGa--UGc -5'
28067 5' -61.7 NC_005887.1 + 11532 0.66 0.343976
Target:  5'- uGGaCGUCgaacUGGCCGA-GGCCGCggUGCGc -3'
miRNA:   3'- -CC-GCAGa---GCCGGCUgCCGGCGg-AUGC- -5'
28067 5' -61.7 NC_005887.1 + 11802 0.67 0.29218
Target:  5'- cGGCGUCgguucguacgcuaaGGCaGGCGGCgGCCUGu- -3'
miRNA:   3'- -CCGCAGag------------CCGgCUGCCGgCGGAUgc -5'
28067 5' -61.7 NC_005887.1 + 11821 1.09 0.000216
Target:  5'- uGGCGUCUCGGCCGACGGCCGCCUACGc -3'
miRNA:   3'- -CCGCAGAGCCGGCUGCCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 12558 0.68 0.282445
Target:  5'- uGGCGUCgaCGGCCGcCGGCaugcgcauggugucCGCCgaccCGg -3'
miRNA:   3'- -CCGCAGa-GCCGGCuGCCG--------------GCGGau--GC- -5'
28067 5' -61.7 NC_005887.1 + 13182 0.67 0.305808
Target:  5'- aGCGggagCGGUCGAgcaGGCCGCCggccgACGu -3'
miRNA:   3'- cCGCaga-GCCGGCUg--CCGGCGGa----UGC- -5'
28067 5' -61.7 NC_005887.1 + 13313 0.68 0.257957
Target:  5'- aGGCG-UUCGGCaaCGcCGGCCGCaucGCGg -3'
miRNA:   3'- -CCGCaGAGCCG--GCuGCCGGCGga-UGC- -5'
28067 5' -61.7 NC_005887.1 + 13379 0.69 0.233465
Target:  5'- uGGCG-CUCGcGCUGAaGGCCGgCgcgGCGg -3'
miRNA:   3'- -CCGCaGAGC-CGGCUgCCGGCgGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 13780 0.69 0.245458
Target:  5'- cGCGUCcgCGcaGCgGGCGGCgaCGCCUACa -3'
miRNA:   3'- cCGCAGa-GC--CGgCUGCCG--GCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 14013 0.69 0.239399
Target:  5'- cGCGcCUCcgcaaccGCCGGCGcGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGAGc------CGGCUGC-CGGCGGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.