miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 11821 1.09 0.000216
Target:  5'- uGGCGUCUCGGCCGACGGCCGCCUACGc -3'
miRNA:   3'- -CCGCAGAGCCGGCUGCCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 39447 0.81 0.030179
Target:  5'- cGGCGUCguucgcggCGGCCGACGuguccgucGUCGCCUGCGc -3'
miRNA:   3'- -CCGCAGa-------GCCGGCUGC--------CGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 25006 0.8 0.036796
Target:  5'- aGCGUCagcUCGcGCCGGCGGCCGCCgGCc -3'
miRNA:   3'- cCGCAG---AGC-CGGCUGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 17326 0.76 0.06822
Target:  5'- uGCG-CUaccggcUGGCCGGCGGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGA------GCCGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 29141 0.76 0.06956
Target:  5'- uGGCGUCagcagcgacacacgUCGGCCGGCGGCCuGCUcgACc -3'
miRNA:   3'- -CCGCAG--------------AGCCGGCUGCCGG-CGGa-UGc -5'
28067 5' -61.7 NC_005887.1 + 28715 0.76 0.074144
Target:  5'- cGGUGcugCUCGGCUGaguGCGGCCGCCgcGCGc -3'
miRNA:   3'- -CCGCa--GAGCCGGC---UGCCGGCGGa-UGC- -5'
28067 5' -61.7 NC_005887.1 + 25948 0.76 0.076226
Target:  5'- cGCGUgagCUucCGGCCGGCGGCCGUCU-CGa -3'
miRNA:   3'- cCGCA---GA--GCCGGCUGCCGGCGGAuGC- -5'
28067 5' -61.7 NC_005887.1 + 22846 0.74 0.097653
Target:  5'- cGGCaGaUCUCGGUaccauCGACGGCCGCCgGCc -3'
miRNA:   3'- -CCG-C-AGAGCCG-----GCUGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 18539 0.74 0.103135
Target:  5'- gGGCGuUCUCGGUgGGCGGCggCGCCggcuucGCGg -3'
miRNA:   3'- -CCGC-AGAGCCGgCUGCCG--GCGGa-----UGC- -5'
28067 5' -61.7 NC_005887.1 + 31042 0.73 0.121368
Target:  5'- cGGCG-CUCGcuGCCGAgcCGGCCG-CUGCGa -3'
miRNA:   3'- -CCGCaGAGC--CGGCU--GCCGGCgGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 27083 0.73 0.124684
Target:  5'- cGGCGgacgCUC-GCCGcgcagcacuGCGGCUGCCUGCu -3'
miRNA:   3'- -CCGCa---GAGcCGGC---------UGCCGGCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 23959 0.72 0.131571
Target:  5'- cGGCGUaggccaUCGgguucgcgagcGCCGGCGcGCCGUCUACGc -3'
miRNA:   3'- -CCGCAg-----AGC-----------CGGCUGC-CGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 8551 0.72 0.138806
Target:  5'- cGCGUggUGGCCGugGGuCCGCgCUugGu -3'
miRNA:   3'- cCGCAgaGCCGGCugCC-GGCG-GAugC- -5'
28067 5' -61.7 NC_005887.1 + 28311 0.72 0.142559
Target:  5'- cGGCaucGUCUCaggcugcGCCGGCGGCgCGCCgGCGg -3'
miRNA:   3'- -CCG---CAGAGc------CGGCUGCCG-GCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 23408 0.72 0.150345
Target:  5'- uGCGUUaUUGGCCgccGACGGCCG-CUGCGa -3'
miRNA:   3'- cCGCAG-AGCCGG---CUGCCGGCgGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 19479 0.71 0.154381
Target:  5'- cGCGaggaUCUgauagCGGCCGGCGGCCGUCgAUGg -3'
miRNA:   3'- cCGC----AGA-----GCCGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 26717 0.71 0.162749
Target:  5'- cGGCGcccugaUCGG-CGAgccCGGCCGCCUGCu -3'
miRNA:   3'- -CCGCag----AGCCgGCU---GCCGGCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 40030 0.71 0.171524
Target:  5'- uGGCG---CGGCUcgaGGCGGCCGgCCUACGc -3'
miRNA:   3'- -CCGCagaGCCGG---CUGCCGGC-GGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 17683 0.7 0.185477
Target:  5'- uGGCGaCgUCGGCacgauguucgUGACGGCCGgCUACa -3'
miRNA:   3'- -CCGCaG-AGCCG----------GCUGCCGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 37705 0.7 0.193821
Target:  5'- cGCGUCgcugagauccuugaUCGcGCCGGCGGCCaccggcGCCgcgGCGa -3'
miRNA:   3'- cCGCAG--------------AGC-CGGCUGCCGG------CGGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.