Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 34243 | 0.66 | 0.336076 |
Target: 5'- cGGCGcCUCGGCgagcgCGGCGaGCUGCgcGCGc -3' miRNA: 3'- -CCGCaGAGCCG-----GCUGC-CGGCGgaUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 33075 | 0.66 | 0.336076 |
Target: 5'- cGGCGUCgcCGuGCCGACcGCCGUgcACa -3' miRNA: 3'- -CCGCAGa-GC-CGGCUGcCGGCGgaUGc -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 11532 | 0.66 | 0.343976 |
Target: 5'- uGGaCGUCgaacUGGCCGA-GGCCGCggUGCGc -3' miRNA: 3'- -CC-GCAGa---GCCGGCUgCCGGCGg-AUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 27341 | 0.66 | 0.343976 |
Target: 5'- cGCGagcaUCaGCUcgGGCGGCaCGCCUGCGg -3' miRNA: 3'- cCGCag--AGcCGG--CUGCCG-GCGGAUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 25823 | 0.66 | 0.360175 |
Target: 5'- cGCGcccaCUCGgcGCCGGCGGCgacgcgaucgGCCUGCGa -3' miRNA: 3'- cCGCa---GAGC--CGGCUGCCGg---------CGGAUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 6240 | 0.66 | 0.368471 |
Target: 5'- cGGaCG-UUCGaaGUCGACgaggaaauGGCCGCCUACGu -3' miRNA: 3'- -CC-GCaGAGC--CGGCUG--------CCGGCGGAUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 17914 | 0.66 | 0.35201 |
Target: 5'- cGGCGUCacaGGuuGgACGGaCGCgCUACGc -3' miRNA: 3'- -CCGCAGag-CCggC-UGCCgGCG-GAUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 11221 | 0.66 | 0.350392 |
Target: 5'- aGGCGUgCgccggaaauauaCGGUCGAUGGCCGCg-ACa -3' miRNA: 3'- -CCGCA-Ga-----------GCCGGCUGCCGGCGgaUGc -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 32413 | 0.66 | 0.336076 |
Target: 5'- -uCGUCgacgUGGCCGGCGGCgaugugGCCgGCGg -3' miRNA: 3'- ccGCAGa---GCCGGCUGCCGg-----CGGaUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 24879 | 0.66 | 0.376898 |
Target: 5'- aGGCGg--CGGCCGAUG-CCGCgCgcuCGg -3' miRNA: 3'- -CCGCagaGCCGGCUGCcGGCG-Gau-GC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 16504 | 0.66 | 0.360175 |
Target: 5'- cGGCGaugUCgcaGGCCGAuCGcGUCGCCgccgGCGc -3' miRNA: 3'- -CCGC---AGag-CCGGCU-GC-CGGCGGa---UGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 27141 | 0.67 | 0.313175 |
Target: 5'- cGGCGaUCacgCGGCCGaACGGCCaCggGCGc -3' miRNA: 3'- -CCGC-AGa--GCCGGC-UGCCGGcGgaUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 25496 | 0.67 | 0.305808 |
Target: 5'- cGGCGgCUCGGaCGAUGGCgCGgCgggugGCGg -3' miRNA: 3'- -CCGCaGAGCCgGCUGCCG-GCgGa----UGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 13182 | 0.67 | 0.305808 |
Target: 5'- aGCGggagCGGUCGAgcaGGCCGCCggccgACGu -3' miRNA: 3'- cCGCaga-GCCGGCUg--CCGGCGGa----UGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 33931 | 0.67 | 0.301453 |
Target: 5'- cGCGUCgacCuGCCGACGGCgcucggcgagcacguCGCgUGCGg -3' miRNA: 3'- cCGCAGa--GcCGGCUGCCG---------------GCGgAUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 11397 | 0.67 | 0.320675 |
Target: 5'- aGCG-CUggCGGCCGGC-GCCGCCaagGCa -3' miRNA: 3'- cCGCaGA--GCCGGCUGcCGGCGGa--UGc -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 11802 | 0.67 | 0.29218 |
Target: 5'- cGGCGUCgguucguacgcuaaGGCaGGCGGCgGCCUGu- -3' miRNA: 3'- -CCGCAGag------------CCGgCUGCCGgCGGAUgc -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 22198 | 0.67 | 0.320675 |
Target: 5'- -cUGUC-CGGCgCGGCGGUCGCauauUACGg -3' miRNA: 3'- ccGCAGaGCCG-GCUGCCGGCGg---AUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 32293 | 0.67 | 0.328309 |
Target: 5'- gGGCGaUCgUCGggccaGCCGGCGcGCCGCagUGCGu -3' miRNA: 3'- -CCGC-AG-AGC-----CGGCUGC-CGGCGg-AUGC- -5' |
|||||||
28067 | 5' | -61.7 | NC_005887.1 | + | 8347 | 0.67 | 0.313175 |
Target: 5'- cGCGUgC-CGuCUGGCGGCCgaaGCCUGCGa -3' miRNA: 3'- cCGCA-GaGCcGGCUGCCGG---CGGAUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home