miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 8347 0.67 0.313175
Target:  5'- cGCGUgC-CGuCUGGCGGCCgaaGCCUGCGa -3'
miRNA:   3'- cCGCA-GaGCcGGCUGCCGG---CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 9277 0.68 0.270972
Target:  5'- cGGCGg-UCGGCaCGGCGacGCCGCagguUACGg -3'
miRNA:   3'- -CCGCagAGCCG-GCUGC--CGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 12558 0.68 0.282445
Target:  5'- uGGCGUCgaCGGCCGcCGGCaugcgcauggugucCGCCgaccCGg -3'
miRNA:   3'- -CCGCAGa-GCCGGCuGCCG--------------GCGGau--GC- -5'
28067 5' -61.7 NC_005887.1 + 11802 0.67 0.29218
Target:  5'- cGGCGUCgguucguacgcuaaGGCaGGCGGCgGCCUGu- -3'
miRNA:   3'- -CCGCAGag------------CCGgCUGCCGgCGGAUgc -5'
28067 5' -61.7 NC_005887.1 + 35143 0.67 0.298576
Target:  5'- cGGCGcCaCGGaCgGGCGGCCGUC-ACGc -3'
miRNA:   3'- -CCGCaGaGCC-GgCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 33931 0.67 0.301453
Target:  5'- cGCGUCgacCuGCCGACGGCgcucggcgagcacguCGCgUGCGg -3'
miRNA:   3'- cCGCAGa--GcCGGCUGCCG---------------GCGgAUGC- -5'
28067 5' -61.7 NC_005887.1 + 13182 0.67 0.305808
Target:  5'- aGCGggagCGGUCGAgcaGGCCGCCggccgACGu -3'
miRNA:   3'- cCGCaga-GCCGGCUg--CCGGCGGa----UGC- -5'
28067 5' -61.7 NC_005887.1 + 25496 0.67 0.305808
Target:  5'- cGGCGgCUCGGaCGAUGGCgCGgCgggugGCGg -3'
miRNA:   3'- -CCGCaGAGCCgGCUGCCG-GCgGa----UGC- -5'
28067 5' -61.7 NC_005887.1 + 27141 0.67 0.313175
Target:  5'- cGGCGaUCacgCGGCCGaACGGCCaCggGCGc -3'
miRNA:   3'- -CCGC-AGa--GCCGGC-UGCCGGcGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 7274 0.68 0.270972
Target:  5'- cGCGacaUCGGCCc-CGGCCGCCcGCu -3'
miRNA:   3'- cCGCag-AGCCGGcuGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 13313 0.68 0.257957
Target:  5'- aGGCG-UUCGGCaaCGcCGGCCGCaucGCGg -3'
miRNA:   3'- -CCGCaGAGCCG--GCuGCCGGCGga-UGC- -5'
28067 5' -61.7 NC_005887.1 + 14013 0.69 0.239399
Target:  5'- cGCGcCUCcgcaaccGCCGGCGcGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGAGc------CGGCUGC-CGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 22846 0.74 0.097653
Target:  5'- cGGCaGaUCUCGGUaccauCGACGGCCGCCgGCc -3'
miRNA:   3'- -CCG-C-AGAGCCG-----GCUGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 18539 0.74 0.103135
Target:  5'- gGGCGuUCUCGGUgGGCGGCggCGCCggcuucGCGg -3'
miRNA:   3'- -CCGC-AGAGCCGgCUGCCG--GCGGa-----UGC- -5'
28067 5' -61.7 NC_005887.1 + 40030 0.71 0.171524
Target:  5'- uGGCG---CGGCUcgaGGCGGCCGgCCUACGc -3'
miRNA:   3'- -CCGCagaGCCGG---CUGCCGGC-GGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 17683 0.7 0.185477
Target:  5'- uGGCGaCgUCGGCacgauguucgUGACGGCCGgCUACa -3'
miRNA:   3'- -CCGCaG-AGCCG----------GCUGCCGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 10098 0.69 0.216404
Target:  5'- gGGCGgCcCGcGCCGACGGCCaGCUgauCGg -3'
miRNA:   3'- -CCGCaGaGC-CGGCUGCCGG-CGGau-GC- -5'
28067 5' -61.7 NC_005887.1 + 4229 0.69 0.227656
Target:  5'- aGGCGUgcugCUCGcGCCGAcgcuCGGCCGCacGCa -3'
miRNA:   3'- -CCGCA----GAGC-CGGCU----GCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 30526 0.69 0.233465
Target:  5'- cGCGUaggCGGCCGuCGGCCGag-ACGc -3'
miRNA:   3'- cCGCAga-GCCGGCuGCCGGCggaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13379 0.69 0.233465
Target:  5'- uGGCG-CUCGcGCUGAaGGCCGgCgcgGCGg -3'
miRNA:   3'- -CCGCaGAGC-CGGCUgCCGGCgGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.