miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 6240 0.66 0.368471
Target:  5'- cGGaCG-UUCGaaGUCGACgaggaaauGGCCGCCUACGu -3'
miRNA:   3'- -CC-GCaGAGC--CGGCUG--------CCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 17232 0.68 0.277675
Target:  5'- cGGCGcuggaUCUCGGCCGGacaacCGGUCGCgaaauccgACGg -3'
miRNA:   3'- -CCGC-----AGAGCCGGCU-----GCCGGCGga------UGC- -5'
28067 5' -61.7 NC_005887.1 + 27737 0.69 0.245458
Target:  5'- cGCGccCUCGacggcGCCGACGGCCGUacGCGu -3'
miRNA:   3'- cCGCa-GAGC-----CGGCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 11821 1.09 0.000216
Target:  5'- uGGCGUCUCGGCCGACGGCCGCCUACGc -3'
miRNA:   3'- -CCGCAGAGCCGGCUGCCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 33075 0.66 0.336076
Target:  5'- cGGCGUCgcCGuGCCGACcGCCGUgcACa -3'
miRNA:   3'- -CCGCAGa-GC-CGGCUGcCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 34243 0.66 0.336076
Target:  5'- cGGCGcCUCGGCgagcgCGGCGaGCUGCgcGCGc -3'
miRNA:   3'- -CCGCaGAGCCG-----GCUGC-CGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 25062 0.67 0.320675
Target:  5'- cGGCGUUUgCGcGCgCGGC-GCCGCCcgACGu -3'
miRNA:   3'- -CCGCAGA-GC-CG-GCUGcCGGCGGa-UGC- -5'
28067 5' -61.7 NC_005887.1 + 7006 0.67 0.320675
Target:  5'- gGGCGUgaagCUCguGGCCGGCcGCCGCg-GCGc -3'
miRNA:   3'- -CCGCA----GAG--CCGGCUGcCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 18916 0.67 0.305809
Target:  5'- cGGCGggaUGGCgGGCGGCUGCg-ACGa -3'
miRNA:   3'- -CCGCagaGCCGgCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 29779 0.68 0.277675
Target:  5'- cGGCGgacaccaugCGcauGCCGGCGGCCGUCgACGc -3'
miRNA:   3'- -CCGCaga------GC---CGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 31429 0.67 0.298576
Target:  5'- gGGCGUgagcaggcCGGCCGACGucaucugcGCCGgCUGCa -3'
miRNA:   3'- -CCGCAga------GCCGGCUGC--------CGGCgGAUGc -5'
28067 5' -61.7 NC_005887.1 + 33483 0.67 0.315411
Target:  5'- cGGCGUCgcgaucucgacgggCGcGCCGGCGuucacaaGCUGCCcGCGa -3'
miRNA:   3'- -CCGCAGa-------------GC-CGGCUGC-------CGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 25823 0.66 0.360175
Target:  5'- cGCGcccaCUCGgcGCCGGCGGCgacgcgaucgGCCUGCGa -3'
miRNA:   3'- cCGCa---GAGC--CGGCUGCCGg---------CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 20252 0.67 0.298576
Target:  5'- cGGCagcaGUUUCcacagaagGGCCccGACGGCCGCCgUGCu -3'
miRNA:   3'- -CCG----CAGAG--------CCGG--CUGCCGGCGG-AUGc -5'
28067 5' -61.7 NC_005887.1 + 27341 0.66 0.343976
Target:  5'- cGCGagcaUCaGCUcgGGCGGCaCGCCUGCGg -3'
miRNA:   3'- cCGCag--AGcCGG--CUGCCG-GCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 38474 0.67 0.320675
Target:  5'- uGGCGUCgUauGCCgGGCuGCCGCCgUACa -3'
miRNA:   3'- -CCGCAG-AgcCGG-CUGcCGGCGG-AUGc -5'
28067 5' -61.7 NC_005887.1 + 20844 0.68 0.284509
Target:  5'- cGGCGUCgUUGcGCCGAUuGCCGgCgGCGa -3'
miRNA:   3'- -CCGCAG-AGC-CGGCUGcCGGCgGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 27824 0.68 0.270972
Target:  5'- cGCG-C-C-GCCGACGGCCgcGCCUGCa -3'
miRNA:   3'- cCGCaGaGcCGGCUGCCGG--CGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 11532 0.66 0.343976
Target:  5'- uGGaCGUCgaacUGGCCGA-GGCCGCggUGCGc -3'
miRNA:   3'- -CC-GCAGa---GCCGGCUgCCGGCGg-AUGC- -5'
28067 5' -61.7 NC_005887.1 + 30201 0.67 0.328309
Target:  5'- cGCGaucgucaccaaUCUgGcGCgCGACGGCgGCCUGCu -3'
miRNA:   3'- cCGC-----------AGAgC-CG-GCUGCCGgCGGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.