miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 36848 0.7 0.197352
Target:  5'- cGGUG-CUgCGGCCGgugcuGCGGCCggugcugcgccaucgGCCUGCGu -3'
miRNA:   3'- -CCGCaGA-GCCGGC-----UGCCGG---------------CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 17807 0.7 0.210959
Target:  5'- gGGCGcC-CGGCCGaagguGCGGCCGC--GCGu -3'
miRNA:   3'- -CCGCaGaGCCGGC-----UGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 39649 0.69 0.216404
Target:  5'- cGCGgCUCGGCCGcuuGCCGCCcgUACGc -3'
miRNA:   3'- cCGCaGAGCCGGCugcCGGCGG--AUGC- -5'
28067 5' -61.7 NC_005887.1 + 10098 0.69 0.216404
Target:  5'- gGGCGgCcCGcGCCGACGGCCaGCUgauCGg -3'
miRNA:   3'- -CCGCaGaGC-CGGCUGCCGG-CGGau-GC- -5'
28067 5' -61.7 NC_005887.1 + 4229 0.69 0.227656
Target:  5'- aGGCGUgcugCUCGcGCCGAcgcuCGGCCGCacGCa -3'
miRNA:   3'- -CCGCA----GAGC-CGGCU----GCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 13379 0.69 0.233465
Target:  5'- uGGCG-CUCGcGCUGAaGGCCGgCgcgGCGg -3'
miRNA:   3'- -CCGCaGAGC-CGGCUgCCGGCgGa--UGC- -5'
28067 5' -61.7 NC_005887.1 + 30526 0.69 0.233465
Target:  5'- cGCGUaggCGGCCGuCGGCCGag-ACGc -3'
miRNA:   3'- cCGCAga-GCCGGCuGCCGGCggaUGC- -5'
28067 5' -61.7 NC_005887.1 + 14013 0.69 0.239399
Target:  5'- cGCGcCUCcgcaaccGCCGGCGcGCCGCCgGCGc -3'
miRNA:   3'- cCGCaGAGc------CGGCUGC-CGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13780 0.69 0.245458
Target:  5'- cGCGUCcgCGcaGCgGGCGGCgaCGCCUACa -3'
miRNA:   3'- cCGCAGa-GC--CGgCUGCCG--GCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 27737 0.69 0.245458
Target:  5'- cGCGccCUCGacggcGCCGACGGCCGUacGCGu -3'
miRNA:   3'- cCGCa-GAGC-----CGGCUGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 13313 0.68 0.257957
Target:  5'- aGGCG-UUCGGCaaCGcCGGCCGCaucGCGg -3'
miRNA:   3'- -CCGCaGAGCCG--GCuGCCGGCGga-UGC- -5'
28067 5' -61.7 NC_005887.1 + 27824 0.68 0.270972
Target:  5'- cGCG-C-C-GCCGACGGCCgcGCCUGCa -3'
miRNA:   3'- cCGCaGaGcCGGCUGCCGG--CGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 9277 0.68 0.270972
Target:  5'- cGGCGg-UCGGCaCGGCGacGCCGCagguUACGg -3'
miRNA:   3'- -CCGCagAGCCG-GCUGC--CGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 7274 0.68 0.270972
Target:  5'- cGCGacaUCGGCCc-CGGCCGCCcGCu -3'
miRNA:   3'- cCGCag-AGCCGGcuGCCGGCGGaUGc -5'
28067 5' -61.7 NC_005887.1 + 29779 0.68 0.277675
Target:  5'- cGGCGgacaccaugCGcauGCCGGCGGCCGUCgACGc -3'
miRNA:   3'- -CCGCaga------GC---CGGCUGCCGGCGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 17232 0.68 0.277675
Target:  5'- cGGCGcuggaUCUCGGCCGGacaacCGGUCGCgaaauccgACGg -3'
miRNA:   3'- -CCGC-----AGAGCCGGCU-----GCCGGCGga------UGC- -5'
28067 5' -61.7 NC_005887.1 + 12558 0.68 0.282445
Target:  5'- uGGCGUCgaCGGCCGcCGGCaugcgcauggugucCGCCgaccCGg -3'
miRNA:   3'- -CCGCAGa-GCCGGCuGCCG--------------GCGGau--GC- -5'
28067 5' -61.7 NC_005887.1 + 20844 0.68 0.284509
Target:  5'- cGGCGUCgUUGcGCCGAUuGCCGgCgGCGa -3'
miRNA:   3'- -CCGCAG-AGC-CGGCUGcCGGCgGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 11802 0.67 0.29218
Target:  5'- cGGCGUCgguucguacgcuaaGGCaGGCGGCgGCCUGu- -3'
miRNA:   3'- -CCGCAGag------------CCGgCUGCCGgCGGAUgc -5'
28067 5' -61.7 NC_005887.1 + 29044 0.67 0.298576
Target:  5'- cGGCGUUgccgaacgccUGGCCGAucUGGUucagCGCCUGCGc -3'
miRNA:   3'- -CCGCAGa---------GCCGGCU--GCCG----GCGGAUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.