miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 32735 0.69 0.428717
Target:  5'- cGGGgUAGCGCggCGcucGCGUGCGCgccGGCGc -3'
miRNA:   3'- -CCUgGUCGCGuaGU---UGUACGCG---CCGU- -5'
28068 3' -55.7 NC_005887.1 + 38644 0.69 0.428717
Target:  5'- cGG-UCGGCGCGcggcUCGACG-GCGUGGUAg -3'
miRNA:   3'- -CCuGGUCGCGU----AGUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4399 0.69 0.428717
Target:  5'- aGGCaauGCGCGcCGGCGaagGCGCGGCGa -3'
miRNA:   3'- cCUGgu-CGCGUaGUUGUa--CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 16154 0.69 0.428717
Target:  5'- -cACCGGCGCGcCGA-GUGCGCGaGCGa -3'
miRNA:   3'- ccUGGUCGCGUaGUUgUACGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 16729 0.69 0.438569
Target:  5'- cGGCCGGCGCgAUCAagucggauuACA--UGCGGCAg -3'
miRNA:   3'- cCUGGUCGCG-UAGU---------UGUacGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 40348 0.69 0.438569
Target:  5'- uGGACUGGC-CGUCGA---GCGCGGCc -3'
miRNA:   3'- -CCUGGUCGcGUAGUUguaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 18558 0.69 0.438569
Target:  5'- cGGcGCCGGCuucGCGggCGACAUGCucgucGCGGCGu -3'
miRNA:   3'- -CC-UGGUCG---CGUa-GUUGUACG-----CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41996 0.68 0.44855
Target:  5'- aGGAUCAGCuCAcCGcgcACAUGCGaCGGCu -3'
miRNA:   3'- -CCUGGUCGcGUaGU---UGUACGC-GCCGu -5'
28068 3' -55.7 NC_005887.1 + 36872 0.68 0.44855
Target:  5'- cGGugCuGCGcCAUCGGCcUGCgucgugguggauGCGGCAg -3'
miRNA:   3'- -CCugGuCGC-GUAGUUGuACG------------CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 24598 0.68 0.44855
Target:  5'- -aACCgGGCGcCAUCAGCc-GCGCGGCc -3'
miRNA:   3'- ccUGG-UCGC-GUAGUUGuaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 11601 0.68 0.456623
Target:  5'- cGGAUCGGCGC-UCGACAcgcaggugcagaGCGUGcGCAa -3'
miRNA:   3'- -CCUGGUCGCGuAGUUGUa-----------CGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 2844 0.68 0.457638
Target:  5'- uGGugCGGCGUgaacuuccaguucGUCAGCcugGCcaGCGGCAa -3'
miRNA:   3'- -CCugGUCGCG-------------UAGUUGua-CG--CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1490 0.68 0.458654
Target:  5'- cGugCGGCGC-UCGcGCG-GCGCGGCc -3'
miRNA:   3'- cCugGUCGCGuAGU-UGUaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 24914 0.68 0.458654
Target:  5'- cGGGCCguAGCGC-UCGACGaGCGCGa-- -3'
miRNA:   3'- -CCUGG--UCGCGuAGUUGUaCGCGCcgu -5'
28068 3' -55.7 NC_005887.1 + 11541 0.68 0.458654
Target:  5'- uGAUCAGCaGC-UCGGCGcgcagcGCGCGGCGg -3'
miRNA:   3'- cCUGGUCG-CGuAGUUGUa-----CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 25015 0.68 0.468879
Target:  5'- -cAUguGCGCGUCAGCAU-CGCGGa- -3'
miRNA:   3'- ccUGguCGCGUAGUUGUAcGCGCCgu -5'
28068 3' -55.7 NC_005887.1 + 28106 0.68 0.47818
Target:  5'- aGACCGGCgGCAagaUCGgaugccgcgccgaACA-GCGCGGCGc -3'
miRNA:   3'- cCUGGUCG-CGU---AGU-------------UGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1906 0.68 0.479219
Target:  5'- aGGGCUAcGCGUucuuUCGGCAgccGgGCGGCGu -3'
miRNA:   3'- -CCUGGU-CGCGu---AGUUGUa--CgCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 25059 0.68 0.479219
Target:  5'- -aACCGGCGUuu--GCGcGCGCGGCGc -3'
miRNA:   3'- ccUGGUCGCGuaguUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 36021 0.68 0.479219
Target:  5'- -aACCAGCaGCGUCAcCucgGCGcCGGCGa -3'
miRNA:   3'- ccUGGUCG-CGUAGUuGua-CGC-GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.