miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 12552 0.67 0.521631
Target:  5'- aGGACguG-GCGUCGACGgccGC-CGGCAu -3'
miRNA:   3'- -CCUGguCgCGUAGUUGUa--CGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 22819 0.67 0.521631
Target:  5'- -uACgCGGCGCAUCcgAACGUGCucaacCGGCAg -3'
miRNA:   3'- ccUG-GUCGCGUAG--UUGUACGc----GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14853 0.67 0.510882
Target:  5'- cGGGCguGCacaccGCAgCAACAgcgcgcaccGCGCGGCAg -3'
miRNA:   3'- -CCUGguCG-----CGUaGUUGUa--------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 32331 0.67 0.510882
Target:  5'- -uGCCAGCGCGgccgcgCGugAUGUGguCGGCGa -3'
miRNA:   3'- ccUGGUCGCGUa-----GUugUACGC--GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4905 0.67 0.510882
Target:  5'- aGGGCCGGCGCGagGuguuCGUGCGCc--- -3'
miRNA:   3'- -CCUGGUCGCGUagUu---GUACGCGccgu -5'
28068 3' -55.7 NC_005887.1 + 18124 0.67 0.510882
Target:  5'- uGGCCAgcaGCGCAUCAAacgGCuuGGCAa -3'
miRNA:   3'- cCUGGU---CGCGUAGUUguaCGcgCCGU- -5'
28068 3' -55.7 NC_005887.1 + 37474 0.67 0.510882
Target:  5'- cGACCaucgucgcgAGCGgAUCGAuCGUGCGCuGCAc -3'
miRNA:   3'- cCUGG---------UCGCgUAGUU-GUACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 11369 0.67 0.510882
Target:  5'- uGAUCAGCGCgggcGUCAGCGcagccggaGCGCuGGCGg -3'
miRNA:   3'- cCUGGUCGCG----UAGUUGUa-------CGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 8207 0.67 0.510882
Target:  5'- -uACCcGCGCAcCGACAcGCGCGGg- -3'
miRNA:   3'- ccUGGuCGCGUaGUUGUaCGCGCCgu -5'
28068 3' -55.7 NC_005887.1 + 19785 0.67 0.509812
Target:  5'- cGACCAGCaucagcgucucggGCAUgucgaucgcggaCGGCAUGCGCaGCGg -3'
miRNA:   3'- cCUGGUCG-------------CGUA------------GUUGUACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 4039 0.68 0.500226
Target:  5'- -aGCCGGUG-AUCGACAacgGCGaCGGCAc -3'
miRNA:   3'- ccUGGUCGCgUAGUUGUa--CGC-GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 35784 0.68 0.500226
Target:  5'- --cUCGGCGC-UCAACGaguuguaGCGCGGCGa -3'
miRNA:   3'- ccuGGUCGCGuAGUUGUa------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 22954 0.68 0.500226
Target:  5'- cGGACCGauaCGCucugCGGCAgcUGCGCGaGCAu -3'
miRNA:   3'- -CCUGGUc--GCGua--GUUGU--ACGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 20819 0.68 0.500226
Target:  5'- cGGugCGGCGgacaacuaCAUCAucgcuaacaACAaccUGCGCGGUAa -3'
miRNA:   3'- -CCugGUCGC--------GUAGU---------UGU---ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 27543 0.68 0.500226
Target:  5'- uGGG-CGGCGCuccAUCAugGUGUGCaGCAc -3'
miRNA:   3'- -CCUgGUCGCG---UAGUugUACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 14713 0.68 0.500226
Target:  5'- cGGGCCgGGCGCggCGAUc-GCGCaGGCGa -3'
miRNA:   3'- -CCUGG-UCGCGuaGUUGuaCGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 5992 0.68 0.492826
Target:  5'- aGGAgCAcGCGCuccugucccccucGUCGGCcuauaccuggaucgaGUGCGCGGCGu -3'
miRNA:   3'- -CCUgGU-CGCG-------------UAGUUG---------------UACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 6275 0.68 0.48967
Target:  5'- cGugCAGCuguaCAUCGacgGCGUGCGCGaGCGc -3'
miRNA:   3'- cCugGUCGc---GUAGU---UGUACGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 29855 0.68 0.48967
Target:  5'- cGGAuCCAGCGCcgcugaAUCGAUcaGCGCGaGCu -3'
miRNA:   3'- -CCU-GGUCGCG------UAGUUGuaCGCGC-CGu -5'
28068 3' -55.7 NC_005887.1 + 1391 0.68 0.48862
Target:  5'- aGGCCcGCGCcgaagcgGUCgAGCAUGCGCucGGCGu -3'
miRNA:   3'- cCUGGuCGCG-------UAG-UUGUACGCG--CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.