miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 38012 0.66 0.576529
Target:  5'- -cGCCGGCGUcgAUCAguuccugcgGCAUGUcCGGCAg -3'
miRNA:   3'- ccUGGUCGCG--UAGU---------UGUACGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4084 0.66 0.569858
Target:  5'- cGGGCaagcaGGCGCAgaUCGGCAUcGaguucgcgcaggacaCGCGGCAg -3'
miRNA:   3'- -CCUGg----UCGCGU--AGUUGUA-C---------------GCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 26961 0.66 0.565421
Target:  5'- -uGCCcGCGCG-CGAUcaGCGCGGCGu -3'
miRNA:   3'- ccUGGuCGCGUaGUUGuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 34705 0.66 0.565421
Target:  5'- cGGCCGucgucGCGCuugCG--GUGCGCGGCGa -3'
miRNA:   3'- cCUGGU-----CGCGua-GUugUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 33363 0.66 0.565421
Target:  5'- cGACugCAGCGgAUguGCAcgcgccgGCGCGGCAg -3'
miRNA:   3'- cCUG--GUCGCgUAguUGUa------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 19046 0.67 0.554369
Target:  5'- uGGGCCgcAGUGCGgcguuguucuUCGGCGcggGCuGCGGCAa -3'
miRNA:   3'- -CCUGG--UCGCGU----------AGUUGUa--CG-CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 5392 0.67 0.554369
Target:  5'- -aGCCAGCGCgaccgGUgAACcgGCggGCGGCGc -3'
miRNA:   3'- ccUGGUCGCG-----UAgUUGuaCG--CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4597 0.67 0.554369
Target:  5'- aGGCC-GCGCAgaugCAACAgaUGCucgccGCGGCGc -3'
miRNA:   3'- cCUGGuCGCGUa---GUUGU--ACG-----CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 277 0.67 0.554369
Target:  5'- aGACgUGGCGCGggAAC-UGCGUGGCGu -3'
miRNA:   3'- cCUG-GUCGCGUagUUGuACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 5730 0.67 0.547768
Target:  5'- aGGAgaaGGCGCG-CGAUgcacugaaacaaaagGUGCGCGGCGu -3'
miRNA:   3'- -CCUgg-UCGCGUaGUUG---------------UACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 17009 0.67 0.543381
Target:  5'- -cGCCAcGCGCAgagCAAgGUGCuuGGCAa -3'
miRNA:   3'- ccUGGU-CGCGUa--GUUgUACGcgCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12057 0.67 0.543381
Target:  5'- cGGCCugacuGCGaa-CGuCGUGCGCGGCAc -3'
miRNA:   3'- cCUGGu----CGCguaGUuGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 2186 0.67 0.543381
Target:  5'- -uGCCGucGCGCAgcucacacgCGGCGaGCGCGGCGc -3'
miRNA:   3'- ccUGGU--CGCGUa--------GUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1555 0.67 0.543381
Target:  5'- aGGACUGGC---UCGACAUGUuCGGCGa -3'
miRNA:   3'- -CCUGGUCGcguAGUUGUACGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 37097 0.67 0.543381
Target:  5'- cGGGCgAGCacaGCcUCGGCGaucGCGCGGCc -3'
miRNA:   3'- -CCUGgUCG---CGuAGUUGUa--CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 2417 0.67 0.540099
Target:  5'- cGAUgcGCGuCGUCGACGcgcccggcucgaucUGCGCGGCAc -3'
miRNA:   3'- cCUGguCGC-GUAGUUGU--------------ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 10005 0.67 0.535733
Target:  5'- -aGCCAGUgccauuucuucgccgGCAUCGGCGUGUgguccuacgcacuGCGGCGc -3'
miRNA:   3'- ccUGGUCG---------------CGUAGUUGUACG-------------CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14631 0.67 0.532466
Target:  5'- aGGGC--GCGCucacggCAGCcgGCGCGGUg -3'
miRNA:   3'- -CCUGguCGCGua----GUUGuaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 28289 0.67 0.532466
Target:  5'- -cGCCgAGCGCGcgCAGCGU-CGUGGCGa -3'
miRNA:   3'- ccUGG-UCGCGUa-GUUGUAcGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 18325 0.67 0.532466
Target:  5'- cGGcACUgggGGCGCAUCGgcgACAUGCGacguucgGGCGa -3'
miRNA:   3'- -CC-UGG---UCGCGUAGU---UGUACGCg------CCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.