miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 5992 0.68 0.492826
Target:  5'- aGGAgCAcGCGCuccugucccccucGUCGGCcuauaccuggaucgaGUGCGCGGCGu -3'
miRNA:   3'- -CCUgGU-CGCG-------------UAGUUG---------------UACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 6275 0.68 0.48967
Target:  5'- cGugCAGCuguaCAUCGacgGCGUGCGCGaGCGc -3'
miRNA:   3'- cCugGUCGc---GUAGU---UGUACGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 6860 0.69 0.409412
Target:  5'- cGGACCucGCGaCGUCGGCcaacGCGCaGGCGc -3'
miRNA:   3'- -CCUGGu-CGC-GUAGUUGua--CGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 7020 0.74 0.217351
Target:  5'- uGGCCGGcCGCcgCGGC--GCGCGGCAg -3'
miRNA:   3'- cCUGGUC-GCGuaGUUGuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 8207 0.67 0.510882
Target:  5'- -uACCcGCGCAcCGACAcGCGCGGg- -3'
miRNA:   3'- ccUGGuCGCGUaGUUGUaCGCGCCgu -5'
28068 3' -55.7 NC_005887.1 + 10005 0.67 0.535733
Target:  5'- -aGCCAGUgccauuucuucgccgGCAUCGGCGUGUgguccuacgcacuGCGGCGc -3'
miRNA:   3'- ccUGGUCG---------------CGUAGUUGUACG-------------CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 11369 0.67 0.510882
Target:  5'- uGAUCAGCGCgggcGUCAGCGcagccggaGCGCuGGCGg -3'
miRNA:   3'- cCUGGUCGCG----UAGUUGUa-------CGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 11499 1.11 0.000448
Target:  5'- aGGACCAGCGCAUCAACAUGCGCGGCAu -3'
miRNA:   3'- -CCUGGUCGCGUAGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 11541 0.68 0.458654
Target:  5'- uGAUCAGCaGC-UCGGCGcgcagcGCGCGGCGg -3'
miRNA:   3'- cCUGGUCG-CGuAGUUGUa-----CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 11601 0.68 0.456623
Target:  5'- cGGAUCGGCGC-UCGACAcgcaggugcagaGCGUGcGCAa -3'
miRNA:   3'- -CCUGGUCGCGuAGUUGUa-----------CGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 11787 0.69 0.399964
Target:  5'- uGACCAGCuCGUCGaaguACAagacgcugcUGCGUGGCGu -3'
miRNA:   3'- cCUGGUCGcGUAGU----UGU---------ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12057 0.67 0.543381
Target:  5'- cGGCCugacuGCGaa-CGuCGUGCGCGGCAc -3'
miRNA:   3'- cCUGGu----CGCguaGUuGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12371 0.66 0.621352
Target:  5'- uGGACCu-CGa--CAGCAUccGCGCGGCGg -3'
miRNA:   3'- -CCUGGucGCguaGUUGUA--CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12552 0.67 0.521631
Target:  5'- aGGACguG-GCGUCGACGgccGC-CGGCAu -3'
miRNA:   3'- -CCUGguCgCGUAGUUGUa--CGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 13394 0.71 0.329588
Target:  5'- aGGCCGGCGCGgcgGACGUcgGCGGCAa -3'
miRNA:   3'- cCUGGUCGCGUag-UUGUAcgCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 13411 0.72 0.275858
Target:  5'- aGGACCGccagugcucgcuGUGCGUCGACGcaauggGCGCGcGCAu -3'
miRNA:   3'- -CCUGGU------------CGCGUAGUUGUa-----CGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 13894 0.74 0.211549
Target:  5'- cGGCUcguGCGCGUCGGCAUuCGUGGCAc -3'
miRNA:   3'- cCUGGu--CGCGUAGUUGUAcGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14215 0.7 0.363598
Target:  5'- cGGACagggCGGCGCcgCGcuguUcgGCGCGGCAu -3'
miRNA:   3'- -CCUG----GUCGCGuaGUu---GuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14535 0.7 0.390657
Target:  5'- cGGCCgucggcGGCGCGUCGaucgGCAUGuCGCGcGCGg -3'
miRNA:   3'- cCUGG------UCGCGUAGU----UGUAC-GCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 14631 0.67 0.532466
Target:  5'- aGGGC--GCGCucacggCAGCcgGCGCGGUg -3'
miRNA:   3'- -CCUGguCGCGua----GUUGuaCGCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.