miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 15912 0.66 0.610107
Target:  5'- cGGAUCucGCGCGgcugCAGCGcgcguucccGCGCGGCc -3'
miRNA:   3'- -CCUGGu-CGCGUa---GUUGUa--------CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 28802 0.66 0.610107
Target:  5'- cGGGCggCAGCGCAUCGccgaucgcauucGCGauCGUGGCGc -3'
miRNA:   3'- -CCUG--GUCGCGUAGU------------UGUacGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12371 0.66 0.621352
Target:  5'- uGGACCu-CGa--CAGCAUccGCGCGGCGg -3'
miRNA:   3'- -CCUGGucGCguaGUUGUA--CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 30936 0.66 0.587686
Target:  5'- -uGCCAGCGCGcUCGGCgGUGaUGuCGGCGc -3'
miRNA:   3'- ccUGGUCGCGU-AGUUG-UAC-GC-GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 32650 0.66 0.587686
Target:  5'- cGACCGuGUGCAgcUCAccggugucgcGCGUGCGCgcuucGGCAa -3'
miRNA:   3'- cCUGGU-CGCGU--AGU----------UGUACGCG-----CCGU- -5'
28068 3' -55.7 NC_005887.1 + 4905 0.67 0.510882
Target:  5'- aGGGCCGGCGCGagGuguuCGUGCGCc--- -3'
miRNA:   3'- -CCUGGUCGCGUagUu---GUACGCGccgu -5'
28068 3' -55.7 NC_005887.1 + 8207 0.67 0.510882
Target:  5'- -uACCcGCGCAcCGACAcGCGCGGg- -3'
miRNA:   3'- ccUGGuCGCGUaGUUGUaCGCGCCgu -5'
28068 3' -55.7 NC_005887.1 + 11369 0.67 0.510882
Target:  5'- uGAUCAGCGCgggcGUCAGCGcagccggaGCGCuGGCGg -3'
miRNA:   3'- cCUGGUCGCG----UAGUUGUa-------CGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 14853 0.67 0.510882
Target:  5'- cGGGCguGCacaccGCAgCAACAgcgcgcaccGCGCGGCAg -3'
miRNA:   3'- -CCUGguCG-----CGUaGUUGUa--------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 5392 0.67 0.554369
Target:  5'- -aGCCAGCGCgaccgGUgAACcgGCggGCGGCGc -3'
miRNA:   3'- ccUGGUCGCG-----UAgUUGuaCG--CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12552 0.67 0.521631
Target:  5'- aGGACguG-GCGUCGACGgccGC-CGGCAu -3'
miRNA:   3'- -CCUGguCgCGUAGUUGUa--CGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14631 0.67 0.532466
Target:  5'- aGGGC--GCGCucacggCAGCcgGCGCGGUg -3'
miRNA:   3'- -CCUGguCGCGua----GUUGuaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 18325 0.67 0.532466
Target:  5'- cGGcACUgggGGCGCAUCGgcgACAUGCGacguucgGGCGa -3'
miRNA:   3'- -CC-UGG---UCGCGUAGU---UGUACGCg------CCGU- -5'
28068 3' -55.7 NC_005887.1 + 28289 0.67 0.532466
Target:  5'- -cGCCgAGCGCGcgCAGCGU-CGUGGCGa -3'
miRNA:   3'- ccUGG-UCGCGUa-GUUGUAcGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 17009 0.67 0.543381
Target:  5'- -cGCCAcGCGCAgagCAAgGUGCuuGGCAa -3'
miRNA:   3'- ccUGGU-CGCGUa--GUUgUACGcgCCGU- -5'
28068 3' -55.7 NC_005887.1 + 37097 0.67 0.543381
Target:  5'- cGGGCgAGCacaGCcUCGGCGaucGCGCGGCc -3'
miRNA:   3'- -CCUGgUCG---CGuAGUUGUa--CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 4597 0.67 0.554369
Target:  5'- aGGCC-GCGCAgaugCAACAgaUGCucgccGCGGCGc -3'
miRNA:   3'- cCUGGuCGCGUa---GUUGU--ACG-----CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 277 0.67 0.554369
Target:  5'- aGACgUGGCGCGggAAC-UGCGUGGCGu -3'
miRNA:   3'- cCUG-GUCGCGUagUUGuACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 22819 0.67 0.521631
Target:  5'- -uACgCGGCGCAUCcgAACGUGCucaacCGGCAg -3'
miRNA:   3'- ccUG-GUCGCGUAG--UUGUACGc----GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1555 0.67 0.543381
Target:  5'- aGGACUGGC---UCGACAUGUuCGGCGa -3'
miRNA:   3'- -CCUGGUCGcguAGUUGUACGcGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.