miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 277 0.67 0.554369
Target:  5'- aGACgUGGCGCGggAAC-UGCGUGGCGu -3'
miRNA:   3'- cCUG-GUCGCGUagUUGuACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1391 0.68 0.48862
Target:  5'- aGGCCcGCGCcgaagcgGUCgAGCAUGCGCucGGCGu -3'
miRNA:   3'- cCUGGuCGCG-------UAG-UUGUACGCG--CCGU- -5'
28068 3' -55.7 NC_005887.1 + 1473 0.66 0.621352
Target:  5'- -cACCGucGCGUuucuucuUCGACGcGCGCGGCGg -3'
miRNA:   3'- ccUGGU--CGCGu------AGUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1490 0.68 0.458654
Target:  5'- cGugCGGCGC-UCGcGCG-GCGCGGCc -3'
miRNA:   3'- cCugGUCGCGuAGU-UGUaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 1555 0.67 0.543381
Target:  5'- aGGACUGGC---UCGACAUGUuCGGCGa -3'
miRNA:   3'- -CCUGGUCGcguAGUUGUACGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1698 0.69 0.418997
Target:  5'- -cACgAGCGCA--AGC-UGCGCGGCAu -3'
miRNA:   3'- ccUGgUCGCGUagUUGuACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1906 0.68 0.479219
Target:  5'- aGGGCUAcGCGUucuuUCGGCAgccGgGCGGCGu -3'
miRNA:   3'- -CCUGGU-CGCGu---AGUUGUa--CgCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1947 0.66 0.587686
Target:  5'- cGACCGGCaCGUCGGcCGUGC-CGGgCAu -3'
miRNA:   3'- cCUGGUCGcGUAGUU-GUACGcGCC-GU- -5'
28068 3' -55.7 NC_005887.1 + 2186 0.67 0.543381
Target:  5'- -uGCCGucGCGCAgcucacacgCGGCGaGCGCGGCGc -3'
miRNA:   3'- ccUGGU--CGCGUa--------GUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 2417 0.67 0.540099
Target:  5'- cGAUgcGCGuCGUCGACGcgcccggcucgaucUGCGCGGCAc -3'
miRNA:   3'- cCUGguCGC-GUAGUUGU--------------ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 2844 0.68 0.457638
Target:  5'- uGGugCGGCGUgaacuuccaguucGUCAGCcugGCcaGCGGCAa -3'
miRNA:   3'- -CCugGUCGCG-------------UAGUUGua-CG--CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 3018 0.69 0.408461
Target:  5'- cGGCCAGCGCcgCGGgcaaagcCAUGCuCGGCc -3'
miRNA:   3'- cCUGGUCGCGuaGUU-------GUACGcGCCGu -5'
28068 3' -55.7 NC_005887.1 + 4039 0.68 0.500226
Target:  5'- -aGCCGGUG-AUCGACAacgGCGaCGGCAc -3'
miRNA:   3'- ccUGGUCGCgUAGUUGUa--CGC-GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4084 0.66 0.569858
Target:  5'- cGGGCaagcaGGCGCAgaUCGGCAUcGaguucgcgcaggacaCGCGGCAg -3'
miRNA:   3'- -CCUGg----UCGCGU--AGUUGUA-C---------------GCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4399 0.69 0.428717
Target:  5'- aGGCaauGCGCGcCGGCGaagGCGCGGCGa -3'
miRNA:   3'- cCUGgu-CGCGUaGUUGUa--CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4597 0.67 0.554369
Target:  5'- aGGCC-GCGCAgaugCAACAgaUGCucgccGCGGCGc -3'
miRNA:   3'- cCUGGuCGCGUa---GUUGU--ACG-----CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4663 0.71 0.329588
Target:  5'- --cCCGGCGUcgCuuGCAUGCGgGGCGg -3'
miRNA:   3'- ccuGGUCGCGuaGu-UGUACGCgCCGU- -5'
28068 3' -55.7 NC_005887.1 + 4905 0.67 0.510882
Target:  5'- aGGGCCGGCGCGagGuguuCGUGCGCc--- -3'
miRNA:   3'- -CCUGGUCGCGUagUu---GUACGCGccgu -5'
28068 3' -55.7 NC_005887.1 + 5392 0.67 0.554369
Target:  5'- -aGCCAGCGCgaccgGUgAACcgGCggGCGGCGc -3'
miRNA:   3'- ccUGGUCGCG-----UAgUUGuaCG--CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 5730 0.67 0.547768
Target:  5'- aGGAgaaGGCGCG-CGAUgcacugaaacaaaagGUGCGCGGCGu -3'
miRNA:   3'- -CCUgg-UCGCGUaGUUG---------------UACGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.