miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 11499 1.11 0.000448
Target:  5'- aGGACCAGCGCAUCAACAUGCGCGGCAu -3'
miRNA:   3'- -CCUGGUCGCGUAGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 26073 0.83 0.045871
Target:  5'- uGG-UCAGCGCGUCAGCGgcccGCGCGGCGu -3'
miRNA:   3'- -CCuGGUCGCGUAGUUGUa---CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15816 0.77 0.120932
Target:  5'- uGACCacgaGGCGCAggugCAGCGcuUGCGCGGCGc -3'
miRNA:   3'- cCUGG----UCGCGUa---GUUGU--ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 33744 0.77 0.131383
Target:  5'- aGGAUCAGCGCGccggccuUCAcgaGCAUcugGCGCGGCGu -3'
miRNA:   3'- -CCUGGUCGCGU-------AGU---UGUA---CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15269 0.76 0.151802
Target:  5'- -aACCAGCGCA---GCAaGCGCGGCAc -3'
miRNA:   3'- ccUGGUCGCGUaguUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 26417 0.76 0.160569
Target:  5'- uGGCCGGCGCAUCGAUuccggcccGCGCGGa- -3'
miRNA:   3'- cCUGGUCGCGUAGUUGua------CGCGCCgu -5'
28068 3' -55.7 NC_005887.1 + 37734 0.75 0.171691
Target:  5'- cGGccACCGGCGCcgCGGCGagcaucuguugcaucUGCGCGGCc -3'
miRNA:   3'- -CC--UGGUCGCGuaGUUGU---------------ACGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 13894 0.74 0.211549
Target:  5'- cGGCUcguGCGCGUCGGCAUuCGUGGCAc -3'
miRNA:   3'- cCUGGu--CGCGUAGUUGUAcGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 36066 0.74 0.217351
Target:  5'- aGACCGGUGCGaacCGACGUGCgGUGGCc -3'
miRNA:   3'- cCUGGUCGCGUa--GUUGUACG-CGCCGu -5'
28068 3' -55.7 NC_005887.1 + 7020 0.74 0.217351
Target:  5'- uGGCCGGcCGCcgCGGC--GCGCGGCAg -3'
miRNA:   3'- cCUGGUC-GCGuaGUUGuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41616 0.74 0.217351
Target:  5'- cGGCCGGCGCGgcccgugaggaUCugcuGCGucUGCGCGGCGc -3'
miRNA:   3'- cCUGGUCGCGU-----------AGu---UGU--ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 34242 0.73 0.255065
Target:  5'- ---gCGGCGCcUCGGCGaGCGCGGCGa -3'
miRNA:   3'- ccugGUCGCGuAGUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 26126 0.72 0.26185
Target:  5'- cGGCCGGCGUAUCGaucgugaccuGCGUguccggucgcaGCGCGGCc -3'
miRNA:   3'- cCUGGUCGCGUAGU----------UGUA-----------CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 35542 0.72 0.26878
Target:  5'- --gUCAGCGCcgauggucugcUCGACAUGUGCGGCGa -3'
miRNA:   3'- ccuGGUCGCGu----------AGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15105 0.72 0.26878
Target:  5'- cGGGCCGGCGCG-CGauGCAguUGCGCcGCGa -3'
miRNA:   3'- -CCUGGUCGCGUaGU--UGU--ACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 13411 0.72 0.275858
Target:  5'- aGGACCGccagugcucgcuGUGCGUCGACGcaauggGCGCGcGCAu -3'
miRNA:   3'- -CCUGGU------------CGCGUAGUUGUa-----CGCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 41920 0.72 0.275858
Target:  5'- aGGGuuCgAGCGCAgCAACAgcgggcgGCGCGGCGc -3'
miRNA:   3'- -CCU--GgUCGCGUaGUUGUa------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41950 0.72 0.283084
Target:  5'- --cCCGGCGUGcUCGcgugguGCGUGCGCGGCGc -3'
miRNA:   3'- ccuGGUCGCGU-AGU------UGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 24966 0.72 0.288231
Target:  5'- cGACCAGCGCGuUCAACA-GCGagcccucgccgaacUGGCGg -3'
miRNA:   3'- cCUGGUCGCGU-AGUUGUaCGC--------------GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 27370 0.71 0.313485
Target:  5'- cGGCCuGCGCG---GCcUGCGCGGCGu -3'
miRNA:   3'- cCUGGuCGCGUaguUGuACGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.