miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 1698 0.69 0.418997
Target:  5'- -cACgAGCGCA--AGC-UGCGCGGCAu -3'
miRNA:   3'- ccUGgUCGCGUagUUGuACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15749 0.7 0.363598
Target:  5'- aGGACCAGgGCAUgAaguACAagGCcGCGGCc -3'
miRNA:   3'- -CCUGGUCgCGUAgU---UGUa-CG-CGCCGu -5'
28068 3' -55.7 NC_005887.1 + 14215 0.7 0.363598
Target:  5'- cGGACagggCGGCGCcgCGcuguUcgGCGCGGCAu -3'
miRNA:   3'- -CCUG----GUCGCGuaGUu---GuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 31687 0.7 0.368905
Target:  5'- cGGGCCGGCugguuCGUCGGCAgaaccucggacgcGUGCGGCGu -3'
miRNA:   3'- -CCUGGUCGc----GUAGUUGUa------------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 19349 0.7 0.372472
Target:  5'- uGACCAugcucGCGCAgcaGACGcGUGCGGCGa -3'
miRNA:   3'- cCUGGU-----CGCGUag-UUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 16462 0.7 0.381492
Target:  5'- cGGGCauGCGC-UCGACc-GCGCGGCAg -3'
miRNA:   3'- -CCUGguCGCGuAGUUGuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 14535 0.7 0.390657
Target:  5'- cGGCCgucggcGGCGCGUCGaucgGCAUGuCGCGcGCGg -3'
miRNA:   3'- cCUGG------UCGCGUAGU----UGUAC-GCGC-CGU- -5'
28068 3' -55.7 NC_005887.1 + 3018 0.69 0.408461
Target:  5'- cGGCCAGCGCcgCGGgcaaagcCAUGCuCGGCc -3'
miRNA:   3'- cCUGGUCGCGuaGUU-------GUACGcGCCGu -5'
28068 3' -55.7 NC_005887.1 + 6860 0.69 0.409412
Target:  5'- cGGACCucGCGaCGUCGGCcaacGCGCaGGCGc -3'
miRNA:   3'- -CCUGGu-CGC-GUAGUUGua--CGCG-CCGU- -5'
28068 3' -55.7 NC_005887.1 + 40009 0.7 0.354872
Target:  5'- aGGACgucgcgguGCGCAUCAug--GCGCGGCu -3'
miRNA:   3'- -CCUGgu------CGCGUAGUuguaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 32437 0.7 0.346294
Target:  5'- uGGCCGGCgGCgAUCAgguugcGCAgccacUGCGCGGCGu -3'
miRNA:   3'- cCUGGUCG-CG-UAGU------UGU-----ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 13394 0.71 0.329588
Target:  5'- aGGCCGGCGCGgcgGACGUcgGCGGCAa -3'
miRNA:   3'- cCUGGUCGCGUag-UUGUAcgCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15816 0.77 0.120932
Target:  5'- uGACCacgaGGCGCAggugCAGCGcuUGCGCGGCGc -3'
miRNA:   3'- cCUGG----UCGCGUa---GUUGU--ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 33744 0.77 0.131383
Target:  5'- aGGAUCAGCGCGccggccuUCAcgaGCAUcugGCGCGGCGu -3'
miRNA:   3'- -CCUGGUCGCGU-------AGU---UGUA---CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 13894 0.74 0.211549
Target:  5'- cGGCUcguGCGCGUCGGCAUuCGUGGCAc -3'
miRNA:   3'- cCUGGu--CGCGUAGUUGUAcGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41616 0.74 0.217351
Target:  5'- cGGCCGGCGCGgcccgugaggaUCugcuGCGucUGCGCGGCGc -3'
miRNA:   3'- cCUGGUCGCGU-----------AGu---UGU--ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 35542 0.72 0.26878
Target:  5'- --gUCAGCGCcgauggucugcUCGACAUGUGCGGCGa -3'
miRNA:   3'- ccuGGUCGCGu----------AGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41950 0.72 0.283084
Target:  5'- --cCCGGCGUGcUCGcgugguGCGUGCGCGGCGc -3'
miRNA:   3'- ccuGGUCGCGU-AGU------UGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 29801 0.71 0.313485
Target:  5'- cGGGCCAGUaGCuggaaGUCuGCggguGUGCGCGGCGc -3'
miRNA:   3'- -CCUGGUCG-CG-----UAGuUG----UACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 16933 0.71 0.320657
Target:  5'- cGACgGGCGCGaugcgugagcgcuUCAACc-GCGCGGCGg -3'
miRNA:   3'- cCUGgUCGCGU-------------AGUUGuaCGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.