miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 36844 0.66 0.621352
Target:  5'- cGGCCGGUGCugCGGCcgGUGCuGCGGCn -3'
miRNA:   3'- cCUGGUCGCGuaGUUG--UACG-CGCCGu -5'
28068 3' -55.7 NC_005887.1 + 2417 0.67 0.540099
Target:  5'- cGAUgcGCGuCGUCGACGcgcccggcucgaucUGCGCGGCAc -3'
miRNA:   3'- cCUGguCGC-GUAGUUGU--------------ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 37474 0.67 0.510882
Target:  5'- cGACCaucgucgcgAGCGgAUCGAuCGUGCGCuGCAc -3'
miRNA:   3'- cCUGG---------UCGCgUAGUU-GUACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 11499 1.11 0.000448
Target:  5'- aGGACCAGCGCAUCAACAUGCGCGGCAu -3'
miRNA:   3'- -CCUGGUCGCGUAGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 30143 0.66 0.621352
Target:  5'- --uCCGGCGCGc---CcgGCGCGGCGc -3'
miRNA:   3'- ccuGGUCGCGUaguuGuaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 12371 0.66 0.621352
Target:  5'- uGGACCu-CGa--CAGCAUccGCGCGGCGg -3'
miRNA:   3'- -CCUGGucGCguaGUUGUA--CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15912 0.66 0.610107
Target:  5'- cGGAUCucGCGCGgcugCAGCGcgcguucccGCGCGGCc -3'
miRNA:   3'- -CCUGGu-CGCGUa---GUUGUa--------CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 1947 0.66 0.587686
Target:  5'- cGACCGGCaCGUCGGcCGUGC-CGGgCAu -3'
miRNA:   3'- cCUGGUCGcGUAGUU-GUACGcGCC-GU- -5'
28068 3' -55.7 NC_005887.1 + 38012 0.66 0.576529
Target:  5'- -cGCCGGCGUcgAUCAguuccugcgGCAUGUcCGGCAg -3'
miRNA:   3'- ccUGGUCGCG--UAGU---------UGUACGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 2186 0.67 0.543381
Target:  5'- -uGCCGucGCGCAgcucacacgCGGCGaGCGCGGCGc -3'
miRNA:   3'- ccUGGU--CGCGUa--------GUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 19046 0.67 0.554369
Target:  5'- uGGGCCgcAGUGCGgcguuguucuUCGGCGcggGCuGCGGCAa -3'
miRNA:   3'- -CCUGG--UCGCGU----------AGUUGUa--CG-CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 15307 0.66 0.587686
Target:  5'- --gUCGG-GCggCAGCGUGCGCGGUc -3'
miRNA:   3'- ccuGGUCgCGuaGUUGUACGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 19357 0.66 0.621352
Target:  5'- cGACCGGCGUcgAUCAGCGgcaacGCGCcauGCu -3'
miRNA:   3'- cCUGGUCGCG--UAGUUGUa----CGCGc--CGu -5'
28068 3' -55.7 NC_005887.1 + 5730 0.67 0.547768
Target:  5'- aGGAgaaGGCGCG-CGAUgcacugaaacaaaagGUGCGCGGCGu -3'
miRNA:   3'- -CCUgg-UCGCGUaGUUG---------------UACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 1473 0.66 0.621352
Target:  5'- -cACCGucGCGUuucuucuUCGACGcGCGCGGCGg -3'
miRNA:   3'- ccUGGU--CGCGu------AGUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 26084 0.66 0.587686
Target:  5'- cGAUCuGCuGCAUCAGCucgGCGaCGGUg -3'
miRNA:   3'- cCUGGuCG-CGUAGUUGua-CGC-GCCGu -5'
28068 3' -55.7 NC_005887.1 + 12057 0.67 0.543381
Target:  5'- cGGCCugacuGCGaa-CGuCGUGCGCGGCAc -3'
miRNA:   3'- cCUGGu----CGCguaGUuGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 10005 0.67 0.535733
Target:  5'- -aGCCAGUgccauuucuucgccgGCAUCGGCGUGUgguccuacgcacuGCGGCGc -3'
miRNA:   3'- ccUGGUCG---------------CGUAGUUGUACG-------------CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 31967 0.66 0.621352
Target:  5'- aGGCCGGCGauaGUCGACGU---CGGCAc -3'
miRNA:   3'- cCUGGUCGCg--UAGUUGUAcgcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 28802 0.66 0.610107
Target:  5'- cGGGCggCAGCGCAUCGccgaucgcauucGCGauCGUGGCGc -3'
miRNA:   3'- -CCUG--GUCGCGUAGU------------UGUacGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.