miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 3' -55.7 NC_005887.1 + 41996 0.68 0.44855
Target:  5'- aGGAUCAGCuCAcCGcgcACAUGCGaCGGCu -3'
miRNA:   3'- -CCUGGUCGcGUaGU---UGUACGC-GCCGu -5'
28068 3' -55.7 NC_005887.1 + 41950 0.72 0.283084
Target:  5'- --cCCGGCGUGcUCGcgugguGCGUGCGCGGCGc -3'
miRNA:   3'- ccuGGUCGCGU-AGU------UGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41920 0.72 0.275858
Target:  5'- aGGGuuCgAGCGCAgCAACAgcgggcgGCGCGGCGc -3'
miRNA:   3'- -CCU--GgUCGCGUaGUUGUa------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 41616 0.74 0.217351
Target:  5'- cGGCCGGCGCGgcccgugaggaUCugcuGCGucUGCGCGGCGc -3'
miRNA:   3'- cCUGGUCGCGU-----------AGu---UGU--ACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 40495 0.66 0.598881
Target:  5'- aGGCgUGGCGCGacgucguguUCGGCAUccaccacgcggcGCGCGGCAg -3'
miRNA:   3'- cCUG-GUCGCGU---------AGUUGUA------------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 40348 0.69 0.438569
Target:  5'- uGGACUGGC-CGUCGA---GCGCGGCc -3'
miRNA:   3'- -CCUGGUCGcGUAGUUguaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 40009 0.7 0.354872
Target:  5'- aGGACgucgcgguGCGCAUCAug--GCGCGGCu -3'
miRNA:   3'- -CCUGgu------CGCGUAGUuguaCGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 38644 0.69 0.428717
Target:  5'- cGG-UCGGCGCGcggcUCGACG-GCGUGGUAg -3'
miRNA:   3'- -CCuGGUCGCGU----AGUUGUaCGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 38012 0.66 0.576529
Target:  5'- -cGCCGGCGUcgAUCAguuccugcgGCAUGUcCGGCAg -3'
miRNA:   3'- ccUGGUCGCG--UAGU---------UGUACGcGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 37734 0.75 0.171691
Target:  5'- cGGccACCGGCGCcgCGGCGagcaucuguugcaucUGCGCGGCc -3'
miRNA:   3'- -CC--UGGUCGCGuaGUUGU---------------ACGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 37474 0.67 0.510882
Target:  5'- cGACCaucgucgcgAGCGgAUCGAuCGUGCGCuGCAc -3'
miRNA:   3'- cCUGG---------UCGCgUAGUU-GUACGCGcCGU- -5'
28068 3' -55.7 NC_005887.1 + 37097 0.67 0.543381
Target:  5'- cGGGCgAGCacaGCcUCGGCGaucGCGCGGCc -3'
miRNA:   3'- -CCUGgUCG---CGuAGUUGUa--CGCGCCGu -5'
28068 3' -55.7 NC_005887.1 + 36872 0.68 0.44855
Target:  5'- cGGugCuGCGcCAUCGGCcUGCgucgugguggauGCGGCAg -3'
miRNA:   3'- -CCugGuCGC-GUAGUUGuACG------------CGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 36844 0.66 0.621352
Target:  5'- cGGCCGGUGCugCGGCcgGUGCuGCGGCn -3'
miRNA:   3'- cCUGGUCGCGuaGUUG--UACG-CGCCGu -5'
28068 3' -55.7 NC_005887.1 + 36066 0.74 0.217351
Target:  5'- aGACCGGUGCGaacCGACGUGCgGUGGCc -3'
miRNA:   3'- cCUGGUCGCGUa--GUUGUACG-CGCCGu -5'
28068 3' -55.7 NC_005887.1 + 36021 0.68 0.479219
Target:  5'- -aACCAGCaGCGUCAcCucgGCGcCGGCGa -3'
miRNA:   3'- ccUGGUCG-CGUAGUuGua-CGC-GCCGU- -5'
28068 3' -55.7 NC_005887.1 + 35784 0.68 0.500226
Target:  5'- --cUCGGCGC-UCAACGaguuguaGCGCGGCGa -3'
miRNA:   3'- ccuGGUCGCGuAGUUGUa------CGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 35542 0.72 0.26878
Target:  5'- --gUCAGCGCcgauggucugcUCGACAUGUGCGGCGa -3'
miRNA:   3'- ccuGGUCGCGu----------AGUUGUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 34705 0.66 0.565421
Target:  5'- cGGCCGucgucGCGCuugCG--GUGCGCGGCGa -3'
miRNA:   3'- cCUGGU-----CGCGua-GUugUACGCGCCGU- -5'
28068 3' -55.7 NC_005887.1 + 34242 0.73 0.255065
Target:  5'- ---gCGGCGCcUCGGCGaGCGCGGCGa -3'
miRNA:   3'- ccugGUCGCGuAGUUGUaCGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.