Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 6458 | 0.68 | 0.300686 |
Target: 5'- aGUGCGCgaccugaaguacGGGCG-CGGCGUCGCggugucUGCCGa -3' miRNA: 3'- -CAUGCG------------CCCGCgGCUGUAGUG------GCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 6882 | 0.74 | 0.116867 |
Target: 5'- -cGCGCaGGCGCUGAucaaguacaugauCAUgGCCGCCGa -3' miRNA: 3'- caUGCGcCCGCGGCU-------------GUAgUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 6959 | 0.67 | 0.331084 |
Target: 5'- cGUGCGCGGGCGCauCGAgCAUgaGCUGUg- -3' miRNA: 3'- -CAUGCGCCCGCG--GCU-GUAg-UGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 7296 | 0.71 | 0.18539 |
Target: 5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3' miRNA: 3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 7990 | 0.66 | 0.389554 |
Target: 5'- aUACGCgGGGCGCU--CGUCuCCaGCCGu -3' miRNA: 3'- cAUGCG-CCCGCGGcuGUAGuGG-CGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8245 | 0.68 | 0.265779 |
Target: 5'- cUGC-CGaGCGCuCGGCGUCACCGCUc -3' miRNA: 3'- cAUGcGCcCGCG-GCUGUAGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8380 | 0.69 | 0.259204 |
Target: 5'- -gGCGCcGGUGCUGACGgaCGCCGCaCGc -3' miRNA: 3'- caUGCGcCCGCGGCUGUa-GUGGCG-GC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8410 | 0.66 | 0.380798 |
Target: 5'- -cGCGUGGGCcgaGCaCGACcaggcuAUCGCCGCa- -3' miRNA: 3'- caUGCGCCCG---CG-GCUG------UAGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8844 | 0.66 | 0.372174 |
Target: 5'- --uCGCGGGCagcuugugaacGCCGGCG-CGCCcGUCGa -3' miRNA: 3'- cauGCGCCCG-----------CGGCUGUaGUGG-CGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9060 | 0.66 | 0.407458 |
Target: 5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3' miRNA: 3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9099 | 0.66 | 0.407458 |
Target: 5'- -aGCGCGGGCaCCGGC---GCCGUUa -3' miRNA: 3'- caUGCGCCCGcGGCUGuagUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9672 | 0.67 | 0.339028 |
Target: 5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3' miRNA: 3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9903 | 0.68 | 0.298495 |
Target: 5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3' miRNA: 3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 10050 | 0.67 | 0.308078 |
Target: 5'- --cUGCGGcGCGCCGGCuggcccgacgAUCGCC-CCGu -3' miRNA: 3'- cauGCGCC-CGCGGCUG----------UAGUGGcGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 10095 | 0.66 | 0.355329 |
Target: 5'- uGUGgGCGGcccGCGCCGACG--GCCaGCUGa -3' miRNA: 3'- -CAUgCGCC---CGCGGCUGUagUGG-CGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 10371 | 0.72 | 0.158029 |
Target: 5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3' miRNA: 3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 11050 | 0.67 | 0.315609 |
Target: 5'- -gGCGCaGGCGUgGACAcugauuuccgCGCCGCUGc -3' miRNA: 3'- caUGCGcCCGCGgCUGUa---------GUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 11386 | 0.71 | 0.18539 |
Target: 5'- -aGCGCagccGGaGCGCUGGCGgccggCGCCGCCa -3' miRNA: 3'- caUGCG----CC-CGCGGCUGUa----GUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 11400 | 1.09 | 0.000251 |
Target: 5'- cGUACGCGGGCGCCGACAUCACCGCCGa -3' miRNA: 3'- -CAUGCGCCCGCGGCUGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 11816 | 0.67 | 0.339028 |
Target: 5'- cUGCGUGGcGUcucgGCCGACG--GCCGCCu -3' miRNA: 3'- cAUGCGCC-CG----CGGCUGUagUGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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